NM_000179.3(MSH6):c.3802-13TTTC[3] AND not provided

Germline classification:: Likely benign (1 submission)
Last evaluated:: Sep 21, 2020
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000828124.2

Allele description [Variation Report for NM_000179.3(MSH6):c.3802-13TTTC[3]]

NM_000179.3(MSH6):c.3802-13TTTC[3]

Gene:

MSH6:mutS homolog 6 [Gene - OMIM - HGNC]

Variant type:

Microsatellite

Cytogenetic location:

2p16.3

Genomic location:

Preferred name:

NM_000179.3(MSH6):c.3802-13TTTC[3]

HGVS:

NC_000002.12:g.47806441TCTT[3]
NC_000002.12:g.47806445_47806448dup
NG_007111.1:g.28295TCTT[3]
NG_008397.1:g.104230GAAA[3]
NM_000179.3:c.3802-13TTTC[3]MANE SELECT
NM_001281492.2:c.3412-13TTTC[3]
NM_001281493.2:c.2896-13TTTC[3]
NM_001281494.2:c.2896-13TTTC[3]
LRG_219:g.28295TCTT[3]
NC_000002.11:g.48033577_48033578insTTTC
NC_000002.11:g.48033580TCTT[3]
NC_000002.11:g.48033584_48033587dup
NM_000179.2:c.3802-7_3802-4dupTCTT

Links:

dbSNP: rs876661171

NCBI 1000 Genomes Browser:

rs876661171

Molecular consequence:

NM_000179.3:c.3802-13TTTC[3] - intron variant - [Sequence Ontology: SO:0001627]
NM_001281492.2:c.3412-13TTTC[3] - intron variant - [Sequence Ontology: SO:0001627]
NM_001281493.2:c.2896-13TTTC[3] - intron variant - [Sequence Ontology: SO:0001627]
NM_001281494.2:c.2896-13TTTC[3] - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000969804	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Likely benign (Sep 21, 2020)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000969804

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Likely benign
(Sep 21, 2020)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV000969804.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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