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NM_001286445.3(RIPOR2):c.3133A>G (p.Thr1045Ala) AND not specified

Germline classification:
Likely benign (1 submission)
Last evaluated:
Aug 23, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000825225.4

Allele description [Variation Report for NM_001286445.3(RIPOR2):c.3133A>G (p.Thr1045Ala)]

NM_001286445.3(RIPOR2):c.3133A>G (p.Thr1045Ala)

Gene:
RIPOR2:RHO family interacting cell polarization regulator 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p22.3
Genomic location:
Preferred name:
NM_001286445.3(RIPOR2):c.3133A>G (p.Thr1045Ala)
HGVS:
  • NC_000006.12:g.24806384T>C
  • NG_051606.1:g.240905A>G
  • NM_001286445.3:c.3133A>GMANE SELECT
  • NM_001346031.2:c.3046A>G
  • NM_001346032.2:c.3046A>G
  • NM_014722.4:c.3196A>G
  • NM_014722.5:c.3196A>G
  • NP_001273374.1:p.Thr1045Ala
  • NP_001332960.1:p.Thr1016Ala
  • NP_001332961.1:p.Thr1016Ala
  • NP_055537.2:p.Thr1066Ala
  • NC_000006.11:g.24806612T>C
  • NM_014722.3:c.3196A>G
Protein change:
T1016A
Links:
dbSNP: rs373913240
NCBI 1000 Genomes Browser:
rs373913240
Molecular consequence:
  • NM_001286445.3:c.3133A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001346031.2:c.3046A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001346032.2:c.3046A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_014722.5:c.3196A>G - missense variant - [Sequence Ontology: SO:0001583]
Observations:
2

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000966507Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Likely benign
(Aug 23, 2017)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided22not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000966507.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testing PubMed (1)

Description

p.Thr1066Ala in exon 23 of FAM65B: This variant is not expected to have clinical significance because it has been identified in 0.65% (14/2154) of African chrom osomes by the Exome Aggregation Consortium (ExAC, http://exac.broadinstitute.org ; dbSNP rs373913240).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided2not provided2not provided

Last Updated: Oct 8, 2024