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NM_001292063.2(OTOG):c.311A>G (p.Asn104Ser) AND not specified

Germline classification:
Benign (1 submission)
Last evaluated:
Feb 1, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000825080.4

Allele description [Variation Report for NM_001292063.2(OTOG):c.311A>G (p.Asn104Ser)]

NM_001292063.2(OTOG):c.311A>G (p.Asn104Ser)

Gene:
OTOG:otogelin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.1
Genomic location:
Preferred name:
NM_001292063.2(OTOG):c.311A>G (p.Asn104Ser)
HGVS:
  • NC_000011.10:g.17553137A>G
  • NG_033191.2:g.10765A>G
  • NM_001277269.2:c.347A>G
  • NM_001292063.2:c.311A>GMANE SELECT
  • NP_001264198.1:p.Asn116Ser
  • NP_001278992.1:p.Asn104Ser
  • NC_000011.9:g.17574684A>G
  • NM_001277269.1:c.347A>G
  • p.Asn116Ser
Protein change:
N104S
Links:
dbSNP: rs534942001
NCBI 1000 Genomes Browser:
rs534942001
Molecular consequence:
  • NM_001277269.2:c.347A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001292063.2:c.311A>G - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000966318Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Benign
(Feb 1, 2019)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown11not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000966318.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

The p.Asn116Ser variant in OTOG is classified as benign because it has been identified in 0.5% (100/19522) of Finnish chromosomes by gnomAD (http://gnomad.broadinstitute.org). ACMG/AMP Criteria applied: BA1.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not provided1not provided

Last Updated: Oct 13, 2024