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NM_001754.5(RUNX1):c.259G>T (p.Gly87Cys) AND Castleman-Kojima disease

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Aug 12, 2019
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000824697.2

Allele description [Variation Report for NM_001754.5(RUNX1):c.259G>T (p.Gly87Cys)]

NM_001754.5(RUNX1):c.259G>T (p.Gly87Cys)

Gene:
RUNX1:RUNX family transcription factor 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
21q22.12
Genomic location:
Preferred name:
NM_001754.5(RUNX1):c.259G>T (p.Gly87Cys)
Other names:
NM_001754.4(RUNX1):c.259G>T
HGVS:
  • NC_000021.9:g.34886935C>A
  • NG_011402.2:g.1102777G>T
  • NM_001001890.3:c.178G>T
  • NM_001122607.2:c.178G>T
  • NM_001754.5:c.259G>TMANE SELECT
  • NP_001001890.1:p.Gly60Cys
  • NP_001116079.1:p.Gly60Cys
  • NP_001745.2:p.Gly87Cys
  • NP_001745.2:p.Gly87Cys
  • LRG_482t1:c.259G>T
  • LRG_482:g.1102777G>T
  • LRG_482p1:p.Gly87Cys
  • NC_000021.8:g.36259232C>A
  • NM_001754.4:c.259G>T
  • p.Gly87Cys
Protein change:
G60C
Links:
dbSNP: rs561166961
NCBI 1000 Genomes Browser:
rs561166961
Molecular consequence:
  • NM_001001890.3:c.178G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001122607.2:c.178G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001754.5:c.259G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Castleman-Kojima disease
Synonyms:
Thrombocytopenia-anasarca-fever-renal insufficiency-organomegaly syndrome; TAFRO syndrome
Identifiers:
MONDO: MONDO:0018702; MedGen: C4552543

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000965596Xiao lab, Department of Pathology, Memorial Sloan Kettering Cancer Center
no assertion criteria provided
Likely pathogenic
(Aug 12, 2019)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Xiao lab, Department of Pathology, Memorial Sloan Kettering Cancer Center, SCV000965596.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024