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NM_000138.5(FBN1):c.4282C>T (p.Arg1428Cys) AND multiple conditions

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 3, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000817203.7

Allele description [Variation Report for NM_000138.5(FBN1):c.4282C>T (p.Arg1428Cys)]

NM_000138.5(FBN1):c.4282C>T (p.Arg1428Cys)

Genes:
LOC126862124:CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:48764566-48765765 [Gene]
FBN1:fibrillin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q21.1
Genomic location:
Preferred name:
NM_000138.5(FBN1):c.4282C>T (p.Arg1428Cys)
HGVS:
  • NC_000015.10:g.48472605G>A
  • NG_008805.2:g.178184C>T
  • NM_000138.5:c.4282C>TMANE SELECT
  • NP_000129.3:p.Arg1428Cys
  • NP_000129.3:p.Arg1428Cys
  • LRG_778t1:c.4282C>T
  • LRG_778:g.178184C>T
  • LRG_778p1:p.Arg1428Cys
  • NC_000015.9:g.48764802G>A
  • NM_000138.4:c.4282C>T
Protein change:
R1428C
Links:
dbSNP: rs1258352189
NCBI 1000 Genomes Browser:
rs1258352189
Molecular consequence:
  • NM_000138.5:c.4282C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Marfan syndrome (MFS)
Synonyms:
MARFAN SYNDROME, TYPE I; Marfan syndrome type 1; Marfan's syndrome; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007947; MedGen: C0024796; Orphanet: 284963; Orphanet: 558; OMIM: 154700
Name:
Familial thoracic aortic aneurysm and aortic dissection (TAAD)
Synonyms:
Thoracic aortic aneurysm and aortic dissection; Thoracic aortic aneurysms and dissections
Identifiers:
MONDO: MONDO:0019625; MedGen: C4707243; Orphanet: 91387; OMIM: PS607086

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000957752Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Sep 3, 2022)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

The importance of genotype-phenotype correlation in the clinical management of Marfan syndrome.

Becerra-Muñoz VM, Gómez-Doblas JJ, Porras-Martín C, Such-Martínez M, Crespo-Leiro MG, Barriales-Villa R, de Teresa-Galván E, Jiménez-Navarro M, Cabrera-Bueno F.

Orphanet J Rare Dis. 2018 Jan 22;13(1):16. doi: 10.1186/s13023-017-0754-6.

PubMed [citation]
PMID:
29357934
PMCID:
PMC5778633

Analysis of TGFBR1*6A variant in individuals evaluated for Marfan syndrome.

Somers AE, Hinton RB, Pilipenko V, Miller E, Ware SM.

Am J Med Genet A. 2016 Jul;170(7):1786-90. doi: 10.1002/ajmg.a.37668. Epub 2016 Apr 26.

PubMed [citation]
PMID:
27112580
See all PubMed Citations (3)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV000957752.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This variant disrupts the p.Arg1428 amino acid residue in FBN1. Other variant(s) that disrupt this residue have been observed in individuals with FBN1-related conditions (PMID: 29357934), which suggests that this may be a clinically significant amino acid residue. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt FBN1 protein function. ClinVar contains an entry for this variant (Variation ID: 660076). This missense change has been observed in individual(s) with Marfan syndrome (PMID: 27112580). This variant is present in population databases (no rsID available, gnomAD 0.003%). This sequence change replaces arginine, which is basic and polar, with cysteine, which is neutral and slightly polar, at codon 1428 of the FBN1 protein (p.Arg1428Cys).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024