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NM_000166.6(GJB1):c.208C>T (p.Pro70Ser) AND Charcot-Marie-Tooth Neuropathy X

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 29, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000803734.7

Allele description [Variation Report for NM_000166.6(GJB1):c.208C>T (p.Pro70Ser)]

NM_000166.6(GJB1):c.208C>T (p.Pro70Ser)

Gene:
GJB1:gap junction protein beta 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq13.1
Genomic location:
Preferred name:
NM_000166.6(GJB1):c.208C>T (p.Pro70Ser)
HGVS:
  • NC_000023.11:g.71223915C>T
  • NG_008357.1:g.13704C>T
  • NM_000166.6:c.208C>TMANE SELECT
  • NM_001097642.3:c.208C>T
  • NP_000157.1:p.Pro70Ser
  • NP_001091111.1:p.Pro70Ser
  • LRG_245t2:c.208C>T
  • LRG_245:g.13704C>T
  • LRG_245p2:p.Pro70Ser
  • NC_000023.10:g.70443765C>T
  • NM_000166.5:c.208C>T
Protein change:
P70S
Links:
dbSNP: rs878853697
NCBI 1000 Genomes Browser:
rs878853697
Molecular consequence:
  • NM_000166.6:c.208C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001097642.3:c.208C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Charcot-Marie-Tooth Neuropathy X
Identifiers:
MedGen: CN118851

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000943619Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Pathogenic
(Apr 29, 2021)
germlineclinical testing

PubMed (4)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

X-linked Charcot-Marie-Tooth disease and connexin32.

Ionasescu VV.

Cell Biol Int. 1998 Nov;22(11-12):807-13.

PubMed [citation]
PMID:
10873293

Phenotype expression in women with CMT1X.

Siskind CE, Murphy SM, Ovens R, Polke J, Reilly MM, Shy ME.

J Peripher Nerv Syst. 2011 Jun;16(2):102-7. doi: 10.1111/j.1529-8027.2011.00332.x.

PubMed [citation]
PMID:
21692908
See all PubMed Citations (4)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV000943619.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (4)

Description

For these reasons, this variant has been classified as Pathogenic. This variant disrupts the p.Pro70 amino acid residue in GJB1. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 10873293, 21692908, Invitae). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt GJB1 protein function. This variant has been observed in individual(s) with Charcot-Marie-Tooth disease (PMID: 18636082, Invitae). ClinVar contains an entry for this variant (Variation ID: 637604). This variant is not present in population databases (ExAC no frequency). This sequence change replaces proline with serine at codon 70 of the GJB1 protein (p.Pro70Ser). The proline residue is highly conserved and there is a moderate physicochemical difference between proline and serine.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024