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NM_000530.8(MPZ):c.188C>G (p.Ser63Cys) AND Charcot-Marie-Tooth disease, type I

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Nov 18, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000803240.9

Allele description [Variation Report for NM_000530.8(MPZ):c.188C>G (p.Ser63Cys)]

NM_000530.8(MPZ):c.188C>G (p.Ser63Cys)

Gene:
MPZ:myelin protein zero [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q23.3
Genomic location:
Preferred name:
NM_000530.8(MPZ):c.188C>G (p.Ser63Cys)
HGVS:
  • NC_000001.11:g.161307304G>C
  • NG_008055.1:g.7669C>G
  • NM_000530.8:c.188C>GMANE SELECT
  • NM_001315491.2:c.188C>G
  • NP_000521.2:p.Ser63Cys
  • NP_001302420.1:p.Ser63Cys
  • LRG_256t1:c.188C>G
  • LRG_256:g.7669C>G
  • LRG_256p1:p.Ser63Cys
  • NC_000001.10:g.161277094G>C
  • NM_000530.6:c.188C>G
  • P25189:p.Ser63Cys
Protein change:
S63C; SER63CYS
Links:
UniProtKB: P25189#VAR_004508; OMIM: 159440.0004; dbSNP: rs121913585
NCBI 1000 Genomes Browser:
rs121913585
Molecular consequence:
  • NM_000530.8:c.188C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001315491.2:c.188C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Charcot-Marie-Tooth disease, type I (CMT1)
Synonyms:
Charcot-Marie-Tooth Neuropathy Type 1; Hereditary Motor and Sensory Neuropathy 1; Charcot-Marie-Tooth, Type 1
Identifiers:
MONDO: MONDO:0019011; MedGen: C0751036

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000943102Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Pathogenic
(Nov 18, 2019)
germlineclinical testing

PubMed (4)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Different intracellular pathomechanisms produce diverse Myelin Protein Zero neuropathies in transgenic mice.

Wrabetz L, D'Antonio M, Pennuto M, Dati G, Tinelli E, Fratta P, Previtali S, Imperiale D, Zielasek J, Toyka K, Avila RL, Kirschner DA, Messing A, Feltri ML, Quattrini A.

J Neurosci. 2006 Feb 22;26(8):2358-68.

PubMed [citation]
PMID:
16495463
PMCID:
PMC6674823

P0 (protein zero) mutation S34C underlies instability of internodal myelin in S63C mice.

Avila RL, D'Antonio M, Bachi A, Inouye H, Feltri ML, Wrabetz L, Kirschner DA.

J Biol Chem. 2010 Dec 31;285(53):42001-12. doi: 10.1074/jbc.M110.166967. Epub 2010 Oct 11.

PubMed [citation]
PMID:
20937820
PMCID:
PMC3009926
See all PubMed Citations (4)

Details of each submission

From Invitae, SCV000943102.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (4)

Description

For these reasons, this variant has been classified as Pathogenic. This variant disrupts the p.Ser63 amino acid residue in MPZ. Other variant that disrupt this residue have been observed in affected individuals (PMID: 22734905, 7693130, 12402337, 8835320), suggesting that it is a clinically significant residue. As a result, variants that disrupt this residue are likely to be causative of disease. Experimental studies using transgenic mouse models have shown that this missense change [p.Ser63Cys] creates a packing defect in the myelin sheath that leads to hypomyelination and these mice develop tremor, ataxia, weakness and muscle atrophy of hind limbs recapitulating phenotypes observed in human neuromuscular disease (PMID: 16495463, 20937820). This variant has been observed to be de novo in an individual affected with Dejerine-Sottas syndrome (PMID: 7506095). ClinVar contains an entry for this variant (Variation ID: 14169). This variant is not present in population databases (ExAC no frequency). This sequence change replaces serine with cysteine at codon 63 of the MPZ protein (p.Ser63Cys). The serine residue is highly conserved and there is a moderate physicochemical difference between serine and cysteine.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 25, 2024