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NM_022552.5(DNMT3A):c.2710C>T (p.Pro904Ser) AND Glioblastoma

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jun 11, 2019
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000785978.1

Allele description [Variation Report for NM_022552.5(DNMT3A):c.2710C>T (p.Pro904Ser)]

NM_022552.5(DNMT3A):c.2710C>T (p.Pro904Ser)

Gene:
DNMT3A:DNA methyltransferase 3 alpha [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p23.3
Genomic location:
Preferred name:
NM_022552.5(DNMT3A):c.2710C>T (p.Pro904Ser)
HGVS:
  • NC_000002.12:g.25234308G>A
  • NG_029465.2:g.113283C>T
  • NM_001320893.1:c.2254C>T
  • NM_001375819.1:c.2041C>T
  • NM_022552.5:c.2710C>TMANE SELECT
  • NM_153759.3:c.2143C>T
  • NM_175629.2:c.2710C>T
  • NP_001307822.1:p.Pro752Ser
  • NP_001362748.1:p.Pro681Ser
  • NP_072046.2:p.Pro904Ser
  • NP_715640.2:p.Pro715Ser
  • NP_783328.1:p.Pro904Ser
  • LRG_459t2:c.2143C>T
  • LRG_459t4:c.2710C>T
  • LRG_459:g.113283C>T
  • LRG_459p2:p.Pro715Ser
  • LRG_459p4:p.Pro904Ser
  • NC_000002.11:g.25457177G>A
  • NR_135490.2:n.3140C>T
  • p.P904S
Protein change:
P681S
Links:
dbSNP: rs1558650888
NCBI 1000 Genomes Browser:
rs1558650888
Molecular consequence:
  • NM_001320893.1:c.2254C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001375819.1:c.2041C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_022552.5:c.2710C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_153759.3:c.2143C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_175629.2:c.2710C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_135490.2:n.3140C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Functional consequence:
Decreased function
Observations:
1

Condition(s)

Name:
Glioblastoma
Synonyms:
Giant cell glioblastoma (histologic variant); Gliosarcoma (histologic variant)
Identifiers:
MONDO: MONDO:0018177; MeSH: D005909; MedGen: C0017636

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000924296Murat Gunel Laboratory, Yale University
no assertion criteria provided
Likely pathogenic
(Jun 11, 2019)
somaticclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Caucasiansomaticyes1not providednot providednot providednot providedclinical testing

Details of each submission

From Murat Gunel Laboratory, Yale University, SCV000924296.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Caucasian1not providednot providedclinical testingnot provided

Description

Somatic mutation DNMT3A p.P904S is found in a patient with recurrent GBM, localizing to the highly conserved catalytic domain.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1somaticyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Apr 23, 2022