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NM_000251.3(MSH2):c.2267C>G (p.Thr756Ser) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jun 5, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000781562.1

Allele description [Variation Report for NM_000251.3(MSH2):c.2267C>G (p.Thr756Ser)]

NM_000251.3(MSH2):c.2267C>G (p.Thr756Ser)

Gene:
MSH2:mutS homolog 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p21
Genomic location:
Preferred name:
NM_000251.3(MSH2):c.2267C>G (p.Thr756Ser)
HGVS:
  • NC_000002.12:g.47478328C>G
  • NG_007110.2:g.80205C>G
  • NM_000251.3:c.2267C>GMANE SELECT
  • NM_001258281.1:c.2069C>G
  • NP_000242.1:p.Thr756Ser
  • NP_000242.1:p.Thr756Ser
  • NP_001245210.1:p.Thr690Ser
  • LRG_218t1:c.2267C>G
  • LRG_218:g.80205C>G
  • LRG_218p1:p.Thr756Ser
  • NC_000002.11:g.47705467C>G
  • NM_000251.1:c.2267C>G
  • NM_000251.2:c.2267C>G
Protein change:
T690S
Links:
dbSNP: rs372383829
NCBI 1000 Genomes Browser:
rs372383829
Molecular consequence:
  • NM_000251.3:c.2267C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001258281.1:c.2069C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000919706Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Uncertain significance
(Jun 5, 2018)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Germline multi-gene hereditary cancer panel testing in an unselected endometrial cancer cohort.

Ring KL, Bruegl AS, Allen BA, Elkin EP, Singh N, Hartman AR, Daniels MS, Broaddus RR.

Mod Pathol. 2016 Nov;29(11):1381-1389. doi: 10.1038/modpathol.2016.135. Epub 2016 Jul 22.

PubMed [citation]
PMID:
27443514
PMCID:
PMC5541389

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV000919706.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

Variant summary: MSH2 c.2267C>G (p.Thr756Ser) results in a conservative amino acid change located in the DNA mismatch repair protein MutS, C-terminal of the encoded protein sequence. Four of five in-silico tools predict a damaging effect of the variant on protein function. The variant allele was found at a frequency of 2.9e-05 in 277176 control chromosomes (gnomAD). The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. The variant, c.2267C>G, has been reported in the literature in an individual affected with endometrial carcinoma and was classified as a VUS (Ring_2016). This report does not provide an unequivocal conclusion about association of the variant with Lynch Syndrome. To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. Two ClinVar submissions from clinical diagnostic laboratories (evaluation after 2014) cite the variant as "uncertain significance." Based on the evidence outlined above, the variant was classified as uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 9, 2024