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NM_000059.4(BRCA2):c.8825C>T (p.Ala2942Val) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 19, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000780004.7

Allele description [Variation Report for NM_000059.4(BRCA2):c.8825C>T (p.Ala2942Val)]

NM_000059.4(BRCA2):c.8825C>T (p.Ala2942Val)

Gene:
BRCA2:BRCA2 DNA repair associated [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q13.1
Genomic location:
Preferred name:
NM_000059.4(BRCA2):c.8825C>T (p.Ala2942Val)
HGVS:
  • NC_000013.11:g.32379387C>T
  • NG_012772.3:g.68908C>T
  • NM_000059.4:c.8825C>TMANE SELECT
  • NP_000050.2:p.Ala2942Val
  • NP_000050.3:p.Ala2942Val
  • LRG_293t1:c.8825C>T
  • LRG_293:g.68908C>T
  • LRG_293p1:p.Ala2942Val
  • NC_000013.10:g.32953524C>T
  • NM_000059.3:c.8825C>T
  • p.A2942V
Protein change:
A2942V
Links:
dbSNP: rs373227180
NCBI 1000 Genomes Browser:
rs373227180
Molecular consequence:
  • NM_000059.4:c.8825C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000916992Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Uncertain significance
(Mar 19, 2024)
germlineclinical testing

PubMed (4)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Clinical characteristics of patients with colorectal cancer with double somatic mismatch repair mutations compared with Lynch syndrome.

Pearlman R, Haraldsdottir S, de la Chapelle A, Jonasson JG, Liyanarachchi S, Frankel WL, Rafnar T, Stefansson K, Pritchard CC, Hampel H.

J Med Genet. 2019 Jul;56(7):462-470. doi: 10.1136/jmedgenet-2018-105698. Epub 2019 Mar 15.

PubMed [citation]
PMID:
30877237
PMCID:
PMC6748629

Germline Mutation in 1338 BRCA-Negative Chinese Hereditary Breast and/or Ovarian Cancer Patients: Clinical Testing with a Multigene Test Panel.

Kwong A, Shin VY, Chen J, Cheuk IWY, Ho CYS, Au CH, Chan KKL, Ngan HYS, Chan TL, Ford JM, Ma ESK.

J Mol Diagn. 2020 Apr;22(4):544-554. doi: 10.1016/j.jmoldx.2020.01.013. Epub 2020 Feb 15.

PubMed [citation]
PMID:
32068069
See all PubMed Citations (4)

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV000916992.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (4)

Description

Variant summary: BRCA2 c.8825C>T (p.Ala2942Val) results in a non-conservative amino acid change located in the Nucleic acid-binding, OB-fold domain (IPR012340) of the encoded protein sequence. Four of five in-silico tools predict a damaging effect of the variant on protein function. The variant was absent in 250828 control chromosomes (gnomAD). The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. c.8825C>T has been reported in the literature in individuals affected with colorectal cancer, breast cancer or acute myeloid leukemia (examples: Peariman_2019, Kwong_2020, Nie_2021). These reports do not provide unequivocal conclusions about association of the variant with Hereditary Breast And Ovarian Cancer Syndrome. At least one co-occurrence with another pathogenic variant has been reported (MSH6 c.2194C>T, p.R732X), providing supporting evidence for a benign role (Peariman_2019). To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. The following publications have been ascertained in the context of this evaluation (PMID: 32068069, 34741701, 30877237, 34250417). ClinVar contains an entry for this variant (Variation ID: 141807). Based on the evidence outlined above, the variant was classified as uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024