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NM_000059.4(BRCA2):c.2998A>C (p.Ile1000Leu) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 11, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000779970.2

Allele description [Variation Report for NM_000059.4(BRCA2):c.2998A>C (p.Ile1000Leu)]

NM_000059.4(BRCA2):c.2998A>C (p.Ile1000Leu)

Gene:
BRCA2:BRCA2 DNA repair associated [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q13.1
Genomic location:
Preferred name:
NM_000059.4(BRCA2):c.2998A>C (p.Ile1000Leu)
HGVS:
  • NC_000013.11:g.32337353A>C
  • NG_012772.3:g.26874A>C
  • NM_000059.4:c.2998A>CMANE SELECT
  • NP_000050.2:p.Ile1000Leu
  • NP_000050.3:p.Ile1000Leu
  • LRG_293t1:c.2998A>C
  • LRG_293:g.26874A>C
  • LRG_293p1:p.Ile1000Leu
  • NC_000013.10:g.32911490A>C
  • NM_000059.3:c.2998A>C
Protein change:
I1000L
Links:
dbSNP: rs1555282999
NCBI 1000 Genomes Browser:
rs1555282999
Molecular consequence:
  • NM_000059.4:c.2998A>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000916940Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Uncertain significance
(Oct 11, 2022)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

BRCA1 and BRCA2 genes mutations among high risk breast cancer patients in Jordan.

Abu-Helalah M, Azab B, Mubaidin R, Ali D, Jafar H, Alshraideh H, Drou N, Awidi A.

Sci Rep. 2020 Oct 16;10(1):17573. doi: 10.1038/s41598-020-74250-2.

PubMed [citation]
PMID:
33067490
PMCID:
PMC7568559

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV000916940.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

Variant summary: BRCA2 c.2998A>C (p.Ile1000Leu) results in a conservative amino acid change in the encoded protein sequence. Five of five in-silico tools predict a benign effect of the variant on protein function. The variant was absent in 250640 control chromosomes. The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. c.2998A>C has been reported in the literature as a VUS in settings of BRCA1/2 sequencing in at-least one individual affected with Breast and/or Ovarian Cancer (example, Abu-Helalah_2020). These report(s) do not provide unequivocal conclusions about association of the variant with Hereditary Breast And Ovarian Cancer Syndrome. To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. Three clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar after 2014 without evidence for independent evaluation. All laboratories classified the variant as uncertain significance. Based on the evidence outlined above, the variant was classified as uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024