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NM_025132.4(WDR19):c.781dup (p.Thr261fs) AND WDR19-related disorder

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jan 16, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000779441.5

Allele description [Variation Report for NM_025132.4(WDR19):c.781dup (p.Thr261fs)]

NM_025132.4(WDR19):c.781dup (p.Thr261fs)

Gene:
WDR19:WD repeat domain 19 [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
4p14
Genomic location:
Preferred name:
NM_025132.4(WDR19):c.781dup (p.Thr261fs)
HGVS:
  • NC_000004.11:g.39207246_39207247insA
  • NC_000004.12:g.39205627dup
  • NG_031813.1:g.28224dup
  • NM_001317924.2:c.301dup
  • NM_025132.4:c.781dupMANE SELECT
  • NP_001304853.1:p.Thr101fs
  • NP_079408.3:p.Thr261fs
  • NC_000004.11:g.39207246_39207247insA
  • NC_000004.11:g.39207247dup
  • NC_000004.11:g.39207247dupA
  • NC_000004.12:g.39205627_39205628insA
  • NM_025132.3:c.781dup
  • NM_025132.3:c.781dupA
Protein change:
T101fs
Links:
dbSNP: rs748656635
NCBI 1000 Genomes Browser:
rs748656635
Molecular consequence:
  • NM_001317924.2:c.301dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_025132.4:c.781dup - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
WDR19-related disorder
Synonyms:
WDR19-Related Disorders; WDR19-related condition
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000916061Illumina Laboratory Services, Illumina
criteria provided, single submitter

(ICSL Variant Classification Criteria 09 May 2019)
Uncertain significance
(Jan 16, 2018)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

WDR19: an ancient, retrograde, intraflagellar ciliary protein is mutated in autosomal recessive retinitis pigmentosa and in Senior-Loken syndrome.

Coussa RG, Otto EA, Gee HY, Arthurs P, Ren H, Lopez I, Keser V, Fu Q, Faingold R, Khan A, Schwartzentruber J, Majewski J, Hildebrandt F, Koenekoop RK.

Clin Genet. 2013 Aug;84(2):150-9. doi: 10.1111/cge.12196.

PubMed [citation]
PMID:
23683095
PMCID:
PMC3904424

Identification of 99 novel mutations in a worldwide cohort of 1,056 patients with a nephronophthisis-related ciliopathy.

Halbritter J, Porath JD, Diaz KA, Braun DA, Kohl S, Chaki M, Allen SJ, Soliman NA, Hildebrandt F, Otto EA; GPN Study Group..

Hum Genet. 2013 Aug;132(8):865-84. doi: 10.1007/s00439-013-1297-0. Epub 2013 Apr 5.

PubMed [citation]
PMID:
23559409
PMCID:
PMC4643834
See all PubMed Citations (3)

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000916061.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

The WDR19 c.781dupA (p.Thr261AsnfsTer13) frameshift variant has been reported in three studies, where it was found in a compound heterozygous state with a missense variant in one individual and in a heterozygous state in three individuals in whom a second variant was not identified (Halbritter et al. 2013; Coussa et al. 2013; Zhang et al. 2018). The compound heterozygous individual and two of the heterozygous individuals showed features of asphyxiating thoracic dystrophy; one of these heterozygotes also exhibited night blindness and was diagnosed with Senior-Løken syndrome. The third heterozygous individual had isolated nephronophthisis. The p.Thr261AsnfsTer13 variant was absent from at least 192 healthy control subjects and is reported at a frequency of 0.000079 in the European (non-Finnish) population of the Genome Aggregation Database. Functional studies have not been conducted for the p.Thr261AsnfsTer13 variant, which occurs in the fifth WD40 repeat domain of the protein. Due to the limited evidence available and the potential impact of frameshift variants, the p.Thr261AsnfsTer13 variant is classified as a variant of unknown significance but suspicious for pathogenicity for WDR19-related disorders. This variant was observed by ICSL as part of a predisposition screen in an ostensibly healthy population.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024