NM_000384.3(APOB):c.9835A>G (p.Ser3279Gly) AND Familial hypercholesterolemia

Germline classification:: Benign (2 submissions)
Last evaluated:: Jun 21, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000771076.12

Allele description [Variation Report for NM_000384.3(APOB):c.9835A>G (p.Ser3279Gly)]

NM_000384.3(APOB):c.9835A>G (p.Ser3279Gly)

Gene:

APOB:apolipoprotein B [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2p24.1

Genomic location:

Preferred name:

NM_000384.3(APOB):c.9835A>G (p.Ser3279Gly)

HGVS:

NC_000002.12:g.21007033T>C
NG_011793.1:g.42041A>G
NM_000384.3:c.9835A>GMANE SELECT
NP_000375.3:p.Ser3279Gly
NC_000002.11:g.21229905T>C
NM_000384.2:c.9835A>G
NP_000375.2:p.S3279G

Protein change:

S3279G

Links:

Molecular consequence:

NM_000384.3:c.9835A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Familial hypercholesterolemia
Identifiers:: MONDO: MONDO:0005439; MedGen: C0020445; OMIM: PS143890

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003836797	Cohesion Phenomics	no assertion criteria provided (ACMG Guidelines, 2015)	Likely benign (Feb 9, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV005074035	GENinCode PLC	criteria provided, single submitter (ACMG Guidelines, 2015)	Benign (Jun 21, 2022)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003836797

Cohesion Phenomics

no assertion criteria provided

(ACMG Guidelines, 2015)

Likely benign
(Feb 9, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV005074035

GENinCode PLC

criteria provided, single submitter

(ACMG Guidelines, 2015)

Benign
(Jun 21, 2022)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Cohesion Phenomics, SCV003836797.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From GENinCode PLC, SCV005074035.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 13, 2024

ClinVar

Relating variation to medicine