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NM_001122955.4(BSCL2):c.776C>T (p.Thr259Ile) AND Congenital generalized lipodystrophy type 2

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jun 12, 2024
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000761420.4

Allele description [Variation Report for NM_001122955.4(BSCL2):c.776C>T (p.Thr259Ile)]

NM_001122955.4(BSCL2):c.776C>T (p.Thr259Ile)

Genes:
BSCL2:BSCL2 lipid droplet biogenesis associated, seipin [Gene - OMIM - HGNC]
HNRNPUL2-BSCL2:HNRNPUL2-BSCL2 readthrough (NMD candidate) [Gene - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q12.3
Genomic location:
Preferred name:
NM_001122955.4(BSCL2):c.776C>T (p.Thr259Ile)
HGVS:
  • NC_000011.10:g.62692463G>A
  • NG_008461.1:g.22112C>T
  • NG_033077.1:g.2437C>T
  • NM_001122955.4:c.776C>TMANE SELECT
  • NM_001130702.2:c.584C>T
  • NM_001386027.1:c.776C>T
  • NM_001386028.1:c.776C>T
  • NM_032667.6:c.584C>T
  • NP_001116427.1:p.Thr259Ile
  • NP_001116427.1:p.Thr259Ile
  • NP_001124174.2:p.Thr195Ile
  • NP_001372956.1:p.Thr259Ile
  • NP_001372957.1:p.Thr259Ile
  • NP_116056.3:p.Thr195Ile
  • LRG_235t1:c.776C>T
  • LRG_235t2:c.584C>T
  • LRG_235:g.22112C>T
  • LRG_235p1:p.Thr259Ile
  • LRG_235p2:p.Thr195Ile
  • NC_000011.9:g.62459935G>A
  • NM_001122955.3:c.776C>T
  • NR_037946.1:n.3296C>T
Protein change:
T195I
Links:
dbSNP: rs1565144468
NCBI 1000 Genomes Browser:
rs1565144468
Molecular consequence:
  • NM_001122955.4:c.776C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001130702.2:c.584C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001386027.1:c.776C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001386028.1:c.776C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_032667.6:c.584C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_037946.1:n.3296C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Congenital generalized lipodystrophy type 2 (CGL2)
Synonyms:
BERARDINELLI SYNDROME; BRUNZELL SYNDROME, BSCL2-RELATED; SEIP SYNDROME
Identifiers:
MONDO: MONDO:0010020; MedGen: C1720863; Orphanet: 528; OMIM: 269700

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000891483Department Of Genetics, Sultan Qaboos University Hospital, Sultan Qaboos University
no assertion criteria provided
Uncertain significance
(Jun 12, 2024)
unknowncuration

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedcuration

Details of each submission

From Department Of Genetics, Sultan Qaboos University Hospital, Sultan Qaboos University, SCV000891483.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcurationnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024