NM_002016.2(FLG):c.6276C>A (p.Tyr2092Ter) AND not provided

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Nov 19, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000760881.2

Allele description [Variation Report for NM_002016.2(FLG):c.6276C>A (p.Tyr2092Ter)]

NM_002016.2(FLG):c.6276C>A (p.Tyr2092Ter)

Genes:

FLG-AS1:FLG antisense RNA 1 [Gene - HGNC]
FLG:filaggrin [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1q21.3

Genomic location:

Preferred name:

NM_002016.2(FLG):c.6276C>A (p.Tyr2092Ter)

HGVS:

NC_000001.11:g.152308610G>T
NG_016190.1:g.21594C>A
NM_002016.2:c.6276C>AMANE SELECT
NP_002007.1:p.Tyr2092Ter
NP_002007.1:p.Tyr2092Ter
LRG_1028t1:c.6276C>A
LRG_1028:g.21594C>A
LRG_1028p1:p.Tyr2092Ter
NC_000001.10:g.152281086G>T
NM_002016.1:c.6276C>A

Protein change:

Y2092*

Links:

dbSNP: rs1425411066

NCBI 1000 Genomes Browser:

rs1425411066

Molecular consequence:

NM_002016.2:c.6276C>A - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: CN517202

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000890777	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Pathogenic (Nov 19, 2019)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000890777

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Pathogenic
(Nov 19, 2019)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV000890777.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Nonsense variant in the C-terminus predicted to result in protein truncation, as the last 1970 amino acids are lost, and other loss-of-function variants have been reported downstream in the Human Gene Mutation Database (Stenson et al., 2014); Not observed at a significant frequency in large population cohorts (Lek et al., 2016); Has been reported previously in the heterozygous state with a second FLG variant in association with atopic dermatitis (Cole et al., 2014).; This variant is associated with the following publications: (PMID: 22322004, 30132823, 20621340, 17502856, 28373353, 26071937, 24880632)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 14, 2023

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