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NM_000527.5(LDLR):c.1061-8T>C AND not provided

Germline classification:
Benign/Likely benign (4 submissions)
Last evaluated:
Jun 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000759074.40

Allele description [Variation Report for NM_000527.5(LDLR):c.1061-8T>C]

NM_000527.5(LDLR):c.1061-8T>C

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.1061-8T>C
Other names:
IVS7 as T-C -8; .
HGVS:
  • NC_000019.10:g.11111506T>C
  • NG_009060.1:g.27126T>C
  • NM_000527.5:c.1061-8T>CMANE SELECT
  • NM_001195798.2:c.1061-8T>C
  • NM_001195799.2:c.938-8T>C
  • NM_001195800.2:c.557-8T>C
  • NM_001195803.2:c.680-8T>C
  • LRG_274t1:c.1061-8T>C
  • LRG_274:g.27126T>C
  • NC_000019.9:g.11222182T>C
  • NM_000527.4:c.1061-8T>C
  • NM_001195803.1:c.680-8T>C
  • c.1061-8T>C
Links:
LDLR-LOVD, British Heart Foundation: LDLR_000154;
Molecular consequence:
  • NM_000527.5:c.1061-8T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195798.2:c.1061-8T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195799.2:c.938-8T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195800.2:c.557-8T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195803.2:c.680-8T>C - intron variant - [Sequence Ontology: SO:0001627]
Observations:
27

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000888160Quest Diagnostics Nichols Institute San Juan Capistrano
criteria provided, single submitter

(Quest Diagnostics criteria)
Benign
(Jul 20, 2022)
unknownclinical testing

PubMed (15)
[See all records that cite these PMIDs]

SCV001151657CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Likely benign
(Jun 1, 2024)
germlineclinical testing

Citation Link,

SCV002048406ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process 2024)
Benign
(Jun 29, 2023)
germlineclinical testing

Citation Link,

SCV005312093Breakthrough Genomics, Breakthrough Genomics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Benigngermlinenot provided

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes27not providednot providednot providednot providedclinical testing, not provided
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Revisiting the morbid genome of Mendelian disorders.

Abouelhoda M, Faquih T, El-Kalioby M, Alkuraya FS.

Genome Biol. 2016 Nov 24;17(1):235.

PubMed [citation]
PMID:
27884173
PMCID:
PMC5123336

Genetic diagnosis of familial hypercholesterolaemia: the importance of functional analysis of potential splice-site mutations.

Bourbon M, Duarte MA, Alves AC, Medeiros AM, Marques L, Soutar AK.

J Med Genet. 2009 May;46(5):352-7. doi: 10.1136/jmg.2007.057000.

PubMed [citation]
PMID:
19411563
See all PubMed Citations (16)

Details of each submission

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV000888160.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (15)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV001151657.25

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided27not providednot providedclinical testingnot provided

Description

LDLR: BP4, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided27not providednot providednot provided

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV002048406.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Breakthrough Genomics, Breakthrough Genomics, SCV005312093.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot provided PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024