NM_000257.4(MYH7):c.3864C>G (p.Ser1288=) AND Cardiomyopathy

Germline classification:: Benign (3 submissions)
Last evaluated:: Dec 15, 2016
Review status:: 3 stars out of maximum of 4 stars
reviewed by expert panel

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000758027.6

Allele description [Variation Report for NM_000257.4(MYH7):c.3864C>G (p.Ser1288=)]

NM_000257.4(MYH7):c.3864C>G (p.Ser1288=)

Gene:

MYH7:myosin heavy chain 7 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

14q11.2

Genomic location:

Preferred name:

NM_000257.4(MYH7):c.3864C>G (p.Ser1288=)

Other names:

p.S1288S:TCC>TCG; NM_000257.3(MYH7):c.3864C>G

HGVS:

NC_000014.9:g.23419285G>C
NG_007884.1:g.21377C>G
NM_000257.4:c.3864C>GMANE SELECT
NP_000248.2:p.Ser1288=
LRG_384t1:c.3864C>G
LRG_384:g.21377C>G
NC_000014.8:g.23888494G>C
NM_000257.2:c.3864C>G
NM_000257.3:c.3864C>G
c.3864C>G
p.Ser1288Ser

Links:

dbSNP: rs45501694

NCBI 1000 Genomes Browser:

rs45501694

Molecular consequence:

NM_000257.4:c.3864C>G - synonymous variant - [Sequence Ontology: SO:0001819]

Observations:

278

Condition(s)

Name:: Cardiomyopathy (CMYO)
Synonyms:: Cardiomyopathies
Identifiers:: MONDO: MONDO:0004994; MedGen: C0878544; Human Phenotype Ontology: HP:0001638

Recent activity

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PREDICTED: Ursus americanus malic enzyme 3 (ME3), transcript variant X1, mRNA
PREDICTED: Ursus americanus malic enzyme 3 (ME3), transcript variant X1, mRNA
gi|2176703971|ref|XM_045815638.1|

Nucleotide
txid62088[Organism] AND (latest[filter] AND all[filter] NOT anoma... (19)
txid62088[Organism] AND (latest[filter] AND all[filter] NOT anomalous[filter])
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Assembly
A9L05_gr01 [Melanotaenia praecox]
A9L05_gr01 [Melanotaenia praecox]
Gene ID:27922608

Gene

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000564482	ClinGen Cardiomyopathy Variant Curation Expert Panel	reviewed by expert panel (ClinGen CMP ACMG Specifications v1)	Benign (Dec 15, 2016)	germline	curation	PubMed (1) [See all records that cite this PMID] Citation Link,
SCV001345530	Color Diagnostics, LLC DBA Color Health	criteria provided, single submitter (ACMG Guidelines, 2015)	Benign (Mar 7, 2018)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV004819109	All of Us Research Program, National Institutes of Health	criteria provided, single submitter (ACMG Guidelines, 2015)	Benign (Feb 5, 2024)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000564482

ClinGen Cardiomyopathy Variant Curation Expert Panel

reviewed by expert panel

(ClinGen CMP ACMG Specifications v1)

Benign
(Dec 15, 2016)

germline

curation

PubMed (1)
[See all records that cite this PMID]

Citation Link,

SCV001345530

Color Diagnostics, LLC DBA Color Health

criteria provided, single submitter

(ACMG Guidelines, 2015)

Benign
(Mar 7, 2018)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV004819109

All of Us Research Program, National Institutes of Health

criteria provided, single submitter

(ACMG Guidelines, 2015)

Benign
(Feb 5, 2024)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	278	not provided	not provided	108544	not provided	clinical testing, curation

Citations

PubMed

Adaptation and validation of the ACMG/AMP variant classification framework for MYH7-associated inherited cardiomyopathies: recommendations by ClinGen's Inherited Cardiomyopathy Expert Panel.

Kelly MA, Caleshu C, Morales A, Buchan J, Wolf Z, Harrison SM, Cook S, Dillon MW, Garcia J, Haverfield E, Jongbloed JDH, Macaya D, Manrai A, Orland K, Richard G, Spoonamore K, Thomas M, Thomson K, Vincent LM, Walsh R, Watkins H, Whiffin N, et al.

Genet Med. 2018 Mar;20(3):351-359. doi: 10.1038/gim.2017.218. Epub 2018 Jan 4.

PubMed [citation]

PMID:: 29300372
PMCID:: PMC5876064

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From ClinGen Cardiomyopathy Variant Curation Expert Panel, SCV000564482.5

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	curation	PubMed (1)

Description

The filtering allele frequency of the c.3864C>G (p.Ser1288=) variant in the MYH7 gene is 1.33% (159/10404) of African chromosomes by the Exome Aggregation Consortium (http://exac.broadinstitute.org), which is a high enough frequency to be classified as benign based on thresholds defined by the ClinGen Inherited Cardiomyopathy Expert Panel (BA1; PMID:29300372).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Color Diagnostics, LLC DBA Color Health, SCV001345530.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From All of Us Research Program, National Institutes of Health, SCV004819109.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	278	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	108544	not provided	not provided		278	not provided	not provided	not provided

Last Updated: Nov 3, 2024

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