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NM_000051.4(ATM):c.502T>C (p.Phe168Leu) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jan 24, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000757012.8

Allele description [Variation Report for NM_000051.4(ATM):c.502T>C (p.Phe168Leu)]

NM_000051.4(ATM):c.502T>C (p.Phe168Leu)

Gene:
ATM:ATM serine/threonine kinase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q22.3
Genomic location:
Preferred name:
NM_000051.4(ATM):c.502T>C (p.Phe168Leu)
HGVS:
  • NC_000011.10:g.108243958T>C
  • NG_009830.1:g.26127T>C
  • NM_000051.4:c.502T>CMANE SELECT
  • NM_001351834.2:c.502T>C
  • NP_000042.3:p.Phe168Leu
  • NP_000042.3:p.Phe168Leu
  • NP_001338763.1:p.Phe168Leu
  • LRG_135t1:c.502T>C
  • LRG_135:g.26127T>C
  • LRG_135p1:p.Phe168Leu
  • NC_000011.9:g.108114685T>C
  • NM_000051.3:c.502T>C
Protein change:
F168L
Links:
dbSNP: rs1565369177
NCBI 1000 Genomes Browser:
rs1565369177
Molecular consequence:
  • NM_000051.4:c.502T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001351834.2:c.502T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000885035ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process)		Uncertain significance
(Jan 24, 2018) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV000885035.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The ATM c.502T>C; p.Phe168Leu variant, to our knowledge, is not reported in the medical literature, gene specific variation databases, nor has it been previously identified by our laboratory. This variant is absent from the general population databases (1000 Genomes Project, Exome Variant Server, Genome Aggregation Database), indicating it is not a common polymorphism. The phenylalanine at position 168 is weakly conserved, considering 9 species, and computational analyses of the effects of the p.Phe168Leu variant on protein structure and function do not predict a deleterious effect (SIFT: tolerated, PolyPhen-2: benign). Based on the available information, the clinical significance of the p.Phe168Leu variant cannot be determined with certainty.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024