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NM_006214.4(PHYH):c.734G>A (p.Arg245Gln) AND Nonsyndromic cleft lip palate

Germline classification:
no classifications from unflagged records (1 submission)
Last evaluated:
Aug 1, 2024
Review status:
no classifications from unflagged records
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000755125.2

Allele description [Variation Report for NM_006214.4(PHYH):c.734G>A (p.Arg245Gln)]

NM_006214.4(PHYH):c.734G>A (p.Arg245Gln)

Gene:
PHYH:phytanoyl-CoA 2-hydroxylase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10p13
Genomic location:
Preferred name:
NM_006214.4(PHYH):c.734G>A (p.Arg245Gln)
HGVS:
  • NC_000010.11:g.13283784C>T
  • NG_012862.1:g.21347G>A
  • NM_001037537.2:c.434G>A
  • NM_001323080.2:c.434G>A
  • NM_001323082.2:c.740G>A
  • NM_001323083.2:c.470G>A
  • NM_001323084.2:c.440G>A
  • NM_006214.4:c.734G>AMANE SELECT
  • NP_001032626.1:p.Arg145Gln
  • NP_001032626.1:p.Arg145Gln
  • NP_001310009.1:p.Arg145Gln
  • NP_001310011.1:p.Arg247Gln
  • NP_001310012.1:p.Arg157Gln
  • NP_001310013.1:p.Arg147Gln
  • NP_006205.1:p.Arg245Gln
  • NC_000010.10:g.13325784C>T
  • NM_001037537.1:c.434G>A
  • NM_006214.3:c.734G>A
  • O14832:p.Arg245Gln
Protein change:
R145Q
Links:
UniProtKB: O14832#VAR_017491; dbSNP: rs62619919
NCBI 1000 Genomes Browser:
rs62619919
Molecular consequence:
  • NM_001037537.2:c.434G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001323080.2:c.434G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001323082.2:c.740G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001323083.2:c.470G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001323084.2:c.440G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_006214.4:c.734G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Nonsyndromic cleft lip palate
Identifiers:

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Assertion and evidence details

No clinical assertions found. See "Flagged submissions" below.

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedinheritedyes3not providednot providednot providednot providedresearch

Citations

PubMed

Using Whole Exome Sequencing to Identify Candidate Genes With Rare Variants In Nonsyndromic Cleft Lip and Palate.

Aylward A, Cai Y, Lee A, Blue E, Rabinowitz D, Haddad J Jr; University of Washington Center for Mendelian Genomics..

Genet Epidemiol. 2016 Jul;40(5):432-41. doi: 10.1002/gepi.21972. Epub 2016 May 27.

PubMed [citation]
PMID:
27229527
PMCID:
PMC4985012

Details of each submission

From University of Washington Center for Mendelian Genomics, University of Washington, SCV000882947.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided3not providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1inheritedyesnot providednot providednot provided3not providednot providednot provided

Flagged submissions

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000882947University of Washington Center for Mendelian Genomics, University of Washington
flagged submission
Reason: Outlier claim with insufficient supporting evidence
Notes: None
Likely pathogenic
(Mar 27, 2016)
inheritedresearch

PubMed (1)
[See all records that cite this PMID]

Last Updated: Nov 3, 2024