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NC_012920.1(MT-ATP6):m.9185T>C AND Mitochondrial complex 5 (ATP synthase) deficiency, mitochondrial type 1

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Jun 14, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000754648.3

Allele description [Variation Report for NC_012920.1(MT-ATP6):m.9185T>C]

NC_012920.1(MT-ATP6):m.9185T>C

Gene:
MT-ATP6:mitochondrially encoded ATP synthase 6 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Genomic location:
Preferred name:
NC_012920.1(MT-ATP6):m.9185T>C
Other names:
MTATP6, 9185T-C, LEU220PRO; L220P
HGVS:
  • NC_012920.1:m.9185T>C
  • NC_012920.1:g.9185T>C
  • m.9185T>C
  • p.Leu220Pro
Protein change:
LEU220PRO
Links:
Genetic Testing Registry (GTR): GTR000500595; OMIM: 516060.0008; dbSNP: rs199476138
NCBI 1000 Genomes Browser:
rs199476138
Observations:
2

Condition(s)

Name:
Mitochondrial complex 5 (ATP synthase) deficiency, mitochondrial type 1
Synonyms:
Mitochondrial complex v (atp synthase) deficiency, mitochondrial type 1
Identifiers:
MONDO: MONDO:0027069; MedGen: C3275684; OMIM: 500015

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000030506OMIM
no assertion criteria provided
Pathogenic
(Apr 15, 2007)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

SCV002580116MGZ Medical Genetics Center
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Jun 14, 2022)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedgermlineyes2not providednot providednot providednot providedclinical testing

Citations

PubMed

Late onset Leigh syndrome and ataxia due to a T to C mutation at bp 9,185 of mitochondrial DNA.

Castagna AE, Addis J, McInnes RR, Clarke JT, Ashby P, Blaser S, Robinson BH.

Am J Med Genet A. 2007 Apr 15;143A(8):808-16.

PubMed [citation]
PMID:
17352390

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From OMIM, SCV000030506.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a patient with mitochondrial complex V (ATP synthase) deficiency mitochondrial type 1 (MC5DM1; 500015), resulting in Leigh syndrome (see 256000), Castagna et al. (2007) identified a heteroplasmic 9185T-C transition in the MTATP6 gene, resulting in a leu220-to-pro (L220P) substitution in the fifth transmembrane helix at the inner surface of the outer mitochondrial membrane. After a normal development, the boy presented at age 8.5 years with a 3-month history of frequent falls, ataxia, slowed speech, poor concentration, bilateral pes cavus, and absent ankle reflexes. Three months later, he developed saccadic paresis and nystagmus and rapidly deteriorated into a comatose state, followed by death. Brain MRI showed symmetric hyperintense signals in the basal ganglia with prominent cerebellar involvement, consistent with Leigh syndrome. The proband had a similarly affected brother, and both boys had greater than 90% mutant DNA levels. The mother and a maternal uncle had isolated peripheral neuropathy and ataxia with 86% and 85% heteroplasmy for the mutation, respectively. Family history revealed 4 additional maternal relatives with the mutation: 2 had Leigh syndrome, and 2 had isolated ataxia. Percentage of heteroplasmy correlated with the severity of the phenotype. Studies of the proband's mitochondria showed a 30% decrease in ATPase activity, although the overall process of ATP synthesis was not affected.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From MGZ Medical Genetics Center, SCV002580116.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided2not providednot providednot provided

Last Updated: Oct 26, 2024