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NM_201384.3(PLEC):c.13479G>A (p.Ser4493=) AND not provided

Germline classification:
Conflicting interpretations of pathogenicity (5 submissions)
Last evaluated:
Jan 1, 2024
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000725567.38

Allele description [Variation Report for NM_201384.3(PLEC):c.13479G>A (p.Ser4493=)]

NM_201384.3(PLEC):c.13479G>A (p.Ser4493=)

Gene:
PLEC:plectin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q24.3
Genomic location:
Preferred name:
NM_201384.3(PLEC):c.13479G>A (p.Ser4493=)
HGVS:
  • NC_000008.11:g.143916342C>T
  • NG_012492.1:g.65404G>A
  • NM_000445.5:c.13560G>A
  • NM_201378.4:c.13437G>A
  • NM_201379.3:c.13413G>A
  • NM_201380.4:c.13890G>A
  • NM_201381.3:c.13383G>A
  • NM_201382.4:c.13479G>A
  • NM_201383.3:c.13491G>A
  • NM_201384.3:c.13479G>AMANE SELECT
  • NP_000436.2:p.Ser4520=
  • NP_958780.1:p.Ser4479=
  • NP_958781.1:p.Ser4471=
  • NP_958782.1:p.Ser4630=
  • NP_958783.1:p.Ser4461=
  • NP_958784.1:p.Ser4493=
  • NP_958785.1:p.Ser4497=
  • NP_958786.1:p.Ser4493=
  • NC_000008.10:g.144990510C>T
  • NM_000445.3:c.13560G>A
  • NM_000445.4:c.13560G>A
Links:
dbSNP: rs781929758
NCBI 1000 Genomes Browser:
rs781929758
Molecular consequence:
  • NM_000445.5:c.13560G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_201378.4:c.13437G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_201379.3:c.13413G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_201380.4:c.13890G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_201381.3:c.13383G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_201382.4:c.13479G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_201383.3:c.13491G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_201384.3:c.13479G>A - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
21

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000337846Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL ClinVar v180209 classification definitions)
Uncertain significance
(Jun 21, 2018)
germlineclinical testing

Citation Link,

SCV000723512GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely benign
(Oct 8, 2019)
germlineclinical testing

Citation Link,

SCV001155495CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Likely benign
(Jan 1, 2024)
germlineclinical testing

Citation Link,

SCV001744838Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus
no assertion criteria provided
Likely benigngermlineclinical testing

SCV001976047Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown13not providednot providednot providednot providedclinical testing
not providedgermlineyes8not providednot providednot providednot providedclinical testing

Details of each submission

From Eurofins Ntd Llc (ga), SCV000337846.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided13not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided13not providednot providednot provided

From GeneDx, SCV000723512.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV001155495.26

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided8not providednot providedclinical testingnot provided

Description

PLEC: BP4, BP7

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided8not providednot providednot provided

From Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus, SCV001744838.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001976047.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024