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NM_001110792.2(MECP2):c.1174G>A (p.Val392Met) AND not provided

Germline classification:
Conflicting interpretations of pathogenicity (3 submissions)
Last evaluated:
Jan 1, 2024
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000724404.24

Allele description [Variation Report for NM_001110792.2(MECP2):c.1174G>A (p.Val392Met)]

NM_001110792.2(MECP2):c.1174G>A (p.Val392Met)

Gene:
MECP2:methyl-CpG binding protein 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq28
Genomic location:
Preferred name:
NM_001110792.2(MECP2):c.1174G>A (p.Val392Met)
Other names:
p.V380M:GTG>ATG; NM_001110792.2(MECP2):c.1174G>A; p.Val392Met
HGVS:
  • NC_000023.11:g.154030690C>T
  • NG_007107.3:g.111414G>A
  • NM_001110792.2:c.1174G>AMANE SELECT
  • NM_001316337.2:c.859G>A
  • NM_001369391.2:c.859G>A
  • NM_001369392.2:c.859G>A
  • NM_001369393.2:c.859G>A
  • NM_001369394.2:c.859G>A
  • NM_001386137.1:c.469G>A
  • NM_001386138.1:c.469G>A
  • NM_001386139.1:c.469G>A
  • NM_004992.4:c.1138G>A
  • NP_001104262.1:p.Val392Met
  • NP_001303266.1:p.Val287Met
  • NP_001356320.1:p.Val287Met
  • NP_001356321.1:p.Val287Met
  • NP_001356322.1:p.Val287Met
  • NP_001356323.1:p.Val287Met
  • NP_001373066.1:p.Val157Met
  • NP_001373067.1:p.Val157Met
  • NP_001373068.1:p.Val157Met
  • NP_004983.1:p.Val380Met
  • NP_004983.1:p.Val380Met
  • LRG_764t1:c.1174G>A
  • LRG_764t2:c.1138G>A
  • AJ132917.1:c.1138G>A
  • LRG_764:g.111414G>A
  • LRG_764p1:p.Val392Met
  • LRG_764p2:p.Val380Met
  • NC_000023.10:g.153296141C>T
  • NG_007107.2:g.111438G>A
  • NM_004992.3:c.1138G>A
Protein change:
V157M
Links:
dbSNP: rs267608572
NCBI 1000 Genomes Browser:
rs267608572
Molecular consequence:
  • NM_001110792.2:c.1174G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001316337.2:c.859G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369391.2:c.859G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369392.2:c.859G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369393.2:c.859G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369394.2:c.859G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001386137.1:c.469G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001386138.1:c.469G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001386139.1:c.469G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004992.4:c.1138G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
2

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000190993GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely benign
(Aug 25, 2020)
germlineclinical testing

Citation Link,

SCV000230274Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Uncertain significance
(Jan 27, 2015)
germlineclinical testing

Citation Link,

SCV004699274CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Likely benign
(Jan 1, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000190993.11

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is associated with the following publications: (PMID: 20116947, 19189931, 26148505)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Eurofins Ntd Llc (ga), SCV000230274.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV004699274.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

MECP2: BP4, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Sep 8, 2024