NM_020223.4(FAM20C):c.346_347insT (p.Pro116fs) AND not provided

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Sep 16, 2018
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000722335.1

Allele description [Variation Report for NM_020223.4(FAM20C):c.346_347insT (p.Pro116fs)]

NM_020223.4(FAM20C):c.346_347insT (p.Pro116fs)

Gene:

FAM20C:FAM20C golgi associated secretory pathway kinase [Gene - OMIM - HGNC]

Variant type:

Insertion

Cytogenetic location:

7p22.3

Genomic location:

Preferred name:

NM_020223.4(FAM20C):c.346_347insT (p.Pro116fs)

HGVS:

NC_000007.14:g.193545_193546insT
NG_033970.1:g.5577_5578insT
NM_020223.4:c.346_347insTMANE SELECT
NP_064608.2:p.Pro116fs
NC_000007.13:g.193545_193546insT

Protein change:

P116fs

Links:

dbSNP: rs1562357112

NCBI 1000 Genomes Browser:

rs1562357112

Molecular consequence:

NM_020223.4:c.346_347insT - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: CN517202

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SAMN19789730 (1)
SRA
Chain I, DNA-directed RNA polymerase III subunit RPC10
Chain I, DNA-directed RNA polymerase III subunit RPC10
gi|1991455760|pdb|7D59|I

Protein
Chain L, DNA-directed RNA polymerases I, II, and III subunit RPABC4
Chain L, DNA-directed RNA polymerases I, II, and III subunit RPABC4
gi|1991455763|pdb|7D59|L

Protein
Chain R, Structure of Human RNA Polymerase III elongation complex
Chain R, Structure of Human RNA Polymerase III elongation complex
gi|2015410988|pdb|7DN3|R

Nucleotide
Chain B, DNA-directed RNA polymerase III subunit RPC2
Chain B, DNA-directed RNA polymerase III subunit RPC2
gi|2015410970|pdb|7DN3|B

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000853466	Gharavi Laboratory, Columbia University	no assertion criteria provided (ACMG Guidelines, 2015)	Uncertain significance (Sep 16, 2018)	germline	research	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000853466

Gharavi Laboratory, Columbia University

no assertion criteria provided

(ACMG Guidelines, 2015)

Uncertain significance
(Sep 16, 2018)

germline

research

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	research

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Gharavi Laboratory, Columbia University, SCV000853466.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	research	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Apr 23, 2022

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