NM_000540.3(RYR1):c.7923C>G (p.Leu2641=) AND not provided

Germline classification:: Conflicting interpretations of pathogenicity (3 submissions)
Last evaluated:: Feb 1, 2024
Review status:: criteria provided, conflicting classifications

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000721683.38

Allele description [Variation Report for NM_000540.3(RYR1):c.7923C>G (p.Leu2641=)]

NM_000540.3(RYR1):c.7923C>G (p.Leu2641=)

Gene:

RYR1:ryanodine receptor 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

19q13.2

Genomic location:

Preferred name:

NM_000540.3(RYR1):c.7923C>G (p.Leu2641=)

HGVS:

NC_000019.10:g.38502967C>G
NG_008866.1:g.74268C>G
NM_000540.3:c.7923C>GMANE SELECT
NM_001042723.2:c.7923C>G
NP_000531.2:p.Leu2641=
NP_000531.2:p.Leu2641=
NP_001036188.1:p.Leu2641=
LRG_766t1:c.7923C>G
LRG_766:g.74268C>G
LRG_766p1:p.Leu2641=
NC_000019.9:g.38993607C>G
NM_000540.2:c.7923C>G

Links:

dbSNP: rs142558977

NCBI 1000 Genomes Browser:

rs142558977

Molecular consequence:

NM_000540.3:c.7923C>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001042723.2:c.7923C>G - synonymous variant - [Sequence Ontology: SO:0001819]

Observations:

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

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Acinetobacter baumannii strain FJ03CW, whole genome shotgun sequencing project
Acinetobacter baumannii strain FJ03CW, whole genome shotgun sequencing project
gi|2636409482|gb|JAXOFV000000000.1| V010000000

Nucleotide
MAG: Aeromicrobium sp. REDSEA-S32_B7 scaffold317, whole genome shotgun sequence
MAG: Aeromicrobium sp. REDSEA-S32_B7 scaffold317, whole genome shotgun sequence
gi|2612313458|ref|NZ_LUNF01000317.1 |WGS:NZ_LUNF01|scaffold317

Nucleotide
zinc finger protein 64 isoform X5 [Homo sapiens]
zinc finger protein 64 isoform X5 [Homo sapiens]
gi|2462580841|ref|XP_054179649.1|

Protein
PREDICTED: Homo sapiens ZFP64 zinc finger protein (ZFP64), transcript variant X1...
PREDICTED: Homo sapiens ZFP64 zinc finger protein (ZFP64), transcript variant X1, mRNA
gi|2217335556|ref|XM_017027945.3|

Nucleotide
PREDICTED: Desmodus rotundus solute carrier family 11 member 1 (SLC11A1), transc...
PREDICTED: Desmodus rotundus solute carrier family 11 member 1 (SLC11A1), transcript variant X2, mRNA
gi|2451093005|ref|XM_053919070.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000230813	Eurofins Ntd Llc (ga)	criteria provided, single submitter (EGL Classification Definitions 2015)	Uncertain significance (Dec 3, 2014)	germline	clinical testing	Citation Link,
SCV000524478	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Likely benign (Aug 5, 2020)	germline	clinical testing	Citation Link,
SCV001151868	CeGaT Center for Human Genetics Tuebingen	criteria provided, single submitter (CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)	Likely benign (Feb 1, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000230813

Eurofins Ntd Llc (ga)

criteria provided, single submitter

(EGL Classification Definitions 2015)

Uncertain significance
(Dec 3, 2014)

germline

clinical testing

Citation Link,

SCV000524478

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Likely benign
(Aug 5, 2020)

germline

clinical testing

Citation Link,

SCV001151868

CeGaT Center for Human Genetics Tuebingen

criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)

Likely benign
(Feb 1, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	18	not provided	not provided	not provided	not provided	clinical testing
not provided	germline	unknown	1	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Eurofins Ntd Llc (ga), SCV000230813.5

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		1	not provided	not provided	not provided

From GeneDx, SCV000524478.6

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant is associated with the following publications: (PMID: 20681998)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From CeGaT Center for Human Genetics Tuebingen, SCV001151868.27

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	18	not provided	not provided	clinical testing	not provided

Description

RYR1: BP4, BP7

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		18	not provided	not provided	not provided

Last Updated: Oct 20, 2024

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