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NM_001184880.2(PCDH19):c.470A>C (p.Asp157Ala) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Nov 19, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000712510.3

Allele description [Variation Report for NM_001184880.2(PCDH19):c.470A>C (p.Asp157Ala)]

NM_001184880.2(PCDH19):c.470A>C (p.Asp157Ala)

Gene:
PCDH19:protocadherin 19 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq22.1
Genomic location:
Preferred name:
NM_001184880.2(PCDH19):c.470A>C (p.Asp157Ala)
HGVS:
  • NC_000023.11:g.100408128T>G
  • NG_021319.1:g.7146A>C
  • NM_001105243.2:c.470A>C
  • NM_001184880.2:c.470A>CMANE SELECT
  • NM_020766.3:c.470A>C
  • NP_001098713.1:p.Asp157Ala
  • NP_001171809.1:p.Asp157Ala
  • NP_065817.2:p.Asp157Ala
  • LRG_843t1:c.470A>C
  • LRG_843:g.7146A>C
  • LRG_843p1:p.Asp157Ala
  • NC_000023.10:g.99663126T>G
  • NM_001184880.1:c.470A>C
Protein change:
D157A
Links:
dbSNP: rs1569315869
NCBI 1000 Genomes Browser:
rs1569315869
Molecular consequence:
  • NM_001105243.2:c.470A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001184880.2:c.470A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_020766.3:c.470A>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000843015Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics Criteria)		likely pathogenic
(Nov 19, 2019) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From Athena Diagnostics, SCV000843015.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This variant has not been reported in large, multi-ethnic general populations (http://gnomad.broadinstitute.org). This variant has been confirmed to occur de novo in one individual tested at Athena Diagnostics with clinical features associated with this gene.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024