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NM_004999.4(MYO6):c.3530G>A (p.Arg1177His) AND not provided

Germline classification:
Conflicting interpretations of pathogenicity (4 submissions)
Last evaluated:
Jan 18, 2024
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000712367.18

Allele description [Variation Report for NM_004999.4(MYO6):c.3530G>A (p.Arg1177His)]

NM_004999.4(MYO6):c.3530G>A (p.Arg1177His)

Gene:
MYO6:myosin VI [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6q14.1
Genomic location:
Preferred name:
NM_004999.4(MYO6):c.3530G>A (p.Arg1177His)
HGVS:
  • NC_000006.12:g.75914153G>A
  • NG_009934.2:g.169961G>A
  • NM_001300899.2:c.3461G>A
  • NM_001368136.1:c.3434G>A
  • NM_001368137.1:c.3491G>A
  • NM_001368138.1:c.3446G>A
  • NM_001368865.1:c.3557G>A
  • NM_001368866.1:c.3530G>A
  • NM_004999.4:c.3530G>AMANE SELECT
  • NP_001287828.1:p.Arg1154His
  • NP_001355065.1:p.Arg1145His
  • NP_001355066.1:p.Arg1164His
  • NP_001355067.1:p.Arg1149His
  • NP_001355794.1:p.Arg1186His
  • NP_001355795.1:p.Arg1177His
  • NP_004990.3:p.Arg1177His
  • LRG_438t1:c.3530G>A
  • LRG_438:g.169961G>A
  • LRG_438p1:p.Arg1177His
  • NC_000006.11:g.76623870G>A
  • NG_009934.1:g.169962G>A
  • NM_004999.3:c.3530G>A
  • NR_160538.1:n.3759G>A
Protein change:
R1145H
Links:
dbSNP: rs139664153
NCBI 1000 Genomes Browser:
rs139664153
Molecular consequence:
  • NM_001300899.2:c.3461G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001368136.1:c.3434G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001368137.1:c.3491G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001368138.1:c.3446G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001368865.1:c.3557G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001368866.1:c.3530G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004999.4:c.3530G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_160538.1:n.3759G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Observations:
2

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000344104Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Uncertain significance
(Sep 7, 2016)
germlineclinical testing

Citation Link,

SCV000842841Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics Criteria)
Uncertain significance
(May 25, 2018)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001017382Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Benign
(Jan 18, 2024)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001813201GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely benign
(Feb 26, 2020)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknown2not providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Eurofins Ntd Llc (ga), SCV000344104.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided2not providednot providednot provided

From Athena Diagnostics, SCV000842841.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001017382.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From GeneDx, SCV001813201.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024