U.S. flag

An official website of the United States government

NM_000162.5(GCK):c.1054del (p.Ile351_Leu352insTer) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 12, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000711756.2

Allele description [Variation Report for NM_000162.5(GCK):c.1054del (p.Ile351_Leu352insTer)]

NM_000162.5(GCK):c.1054del (p.Ile351_Leu352insTer)

Gene:
GCK:glucokinase [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
7p13
Genomic location:
Preferred name:
NM_000162.5(GCK):c.1054del (p.Ile351_Leu352insTer)
Other names:
NM_000162.5(GCK):c.1054del; p.Ile351_Leu352insTer
HGVS:
  • NC_000007.14:g.44145697del
  • NG_008847.2:g.57475del
  • NM_000162.5:c.1054delMANE SELECT
  • NM_001354800.1:c.1054del
  • NM_001354801.1:c.43del
  • NM_001354802.1:c.-87del
  • NM_001354803.2:c.88del
  • NM_033507.3:c.1057del
  • NM_033508.3:c.1051del
  • NP_000153.1:p.Ile351_Leu352insTer
  • NP_001341729.1:p.Ile351_Leu352insTer
  • NP_001341730.1:p.Ile14_Leu15insTer
  • NP_001341732.1:p.Ile29_Leu30insTer
  • NP_277042.1:p.Ile352_Leu353insTer
  • NP_277043.1:p.Ile350_Leu351insTer
  • LRG_1074t1:c.1054del
  • LRG_1074t2:c.1057del
  • LRG_1074:g.57475del
  • LRG_1074p1:p.Ile351_Leu352insTer
  • LRG_1074p2:p.Ile352_Leu353insTer
  • NC_000007.13:g.44185296del
  • NM_000162.3:c.1054del
Links:
dbSNP: rs1562713041
NCBI 1000 Genomes Browser:
rs1562713041
Molecular consequence:
  • NM_001354802.1:c.-87del - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_000162.5:c.1054del - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354800.1:c.1054del - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354801.1:c.43del - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354803.2:c.88del - nonsense - [Sequence Ontology: SO:0001587]
  • NM_033507.3:c.1057del - nonsense - [Sequence Ontology: SO:0001587]
  • NM_033508.3:c.1051del - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000842150Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics Criteria)		Pathogenic
(Dec 12, 2017) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From Athena Diagnostics, SCV000842150.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024