NM_000500.9(CYP21A2):c.17TGC[4] (p.Leu10del) AND not provided

Germline classification:: Benign (1 submission)
Last evaluated:: Jul 18, 2017
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000711375.3

Allele description [Variation Report for NM_000500.9(CYP21A2):c.17TGC[4] (p.Leu10del)]

NM_000500.9(CYP21A2):c.17TGC[4] (p.Leu10del)

Genes:

LOC110631417:CYP21A2 5' regulatory region [Gene]
LOC106780800:CYP21A2 recombination region [Gene]
CYP21A2:cytochrome P450 family 21 subfamily A member 2 [Gene - OMIM - HGNC]

Variant type:

Microsatellite

Cytogenetic location:

6p21.33

Genomic location:

Preferred name:

NM_000500.9(CYP21A2):c.17TGC[4] (p.Leu10del)

HGVS:

NC_000006.12:g.32038439TGC[4]
NG_007941.3:g.5135TGC[4]
NG_045215.1:g.668TGC[4]
NG_055451.1:g.5115TGC[4]
NM_000500.9:c.17TGC[4]MANE SELECT
NM_001128590.4:c.17TGC[4]
NM_001368143.2:c.-408TGC[4]
NM_001368144.2:c.-318TGC[4]
NP_000491.4:p.Leu10del
NP_001122062.3:p.Leu10del
LRG_829t1:c.17TGC[4]
LRG_829:g.5135TGC[4]
LRG_829p1:p.Leu10del
NC_000006.11:g.32006216TGC[4]
NM_000500.7:c.29_31delTGC

Protein change:

L10del

Links:

dbSNP: rs61338903

NCBI 1000 Genomes Browser:

rs61338903

Molecular consequence:

NM_001368143.2:c.-408TGC[4] - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001368144.2:c.-318TGC[4] - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_000500.9:c.17TGC[4] - inframe_deletion - [Sequence Ontology: SO:0001822]
NM_001128590.4:c.17TGC[4] - inframe_deletion - [Sequence Ontology: SO:0001822]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000841738	Athena Diagnostics	criteria provided, single submitter (Athena Diagnostics Criteria)	Benign (Jul 18, 2017)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000841738

Athena Diagnostics

criteria provided, single submitter

(Athena Diagnostics Criteria)

Benign
(Jul 18, 2017)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]

PMID:: 26467025
PMCID:: PMC4737317

Details of each submission

From Athena Diagnostics, SCV000841738.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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