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NM_001130987.2(DYSF):c.4143C>T (p.Gly1381=) AND not provided

Germline classification:
Conflicting interpretations of pathogenicity (4 submissions)
Last evaluated:
Jul 1, 2023
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000710131.24

Allele description [Variation Report for NM_001130987.2(DYSF):c.4143C>T (p.Gly1381=)]

NM_001130987.2(DYSF):c.4143C>T (p.Gly1381=)

Gene:
DYSF:dysferlin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p13.2
Genomic location:
Preferred name:
NM_001130987.2(DYSF):c.4143C>T (p.Gly1381=)
HGVS:
  • NC_000002.12:g.71611548C>T
  • NG_008694.1:g.162926C>T
  • NM_001130455.2:c.4092C>T
  • NM_001130976.2:c.4047C>T
  • NM_001130977.2:c.4047C>T
  • NM_001130978.2:c.4089C>T
  • NM_001130979.2:c.4182C>T
  • NM_001130980.2:c.4140C>T
  • NM_001130981.2:c.4140C>T
  • NM_001130982.2:c.4185C>T
  • NM_001130983.2:c.4092C>T
  • NM_001130984.2:c.4050C>T
  • NM_001130985.2:c.4143C>T
  • NM_001130986.2:c.4050C>T
  • NM_001130987.2:c.4143C>TMANE SELECT
  • NM_003494.4:c.4089C>T
  • NP_001123927.1:p.Gly1364=
  • NP_001124448.1:p.Gly1349=
  • NP_001124449.1:p.Gly1349=
  • NP_001124450.1:p.Gly1363=
  • NP_001124451.1:p.Gly1394=
  • NP_001124452.1:p.Gly1380=
  • NP_001124453.1:p.Gly1380=
  • NP_001124454.1:p.Gly1395=
  • NP_001124455.1:p.Gly1364=
  • NP_001124456.1:p.Gly1350=
  • NP_001124457.1:p.Gly1381=
  • NP_001124458.1:p.Gly1350=
  • NP_001124459.1:p.Gly1381=
  • NP_003485.1:p.Gly1363=
  • LRG_845t1:c.4089C>T
  • LRG_845t2:c.4143C>T
  • LRG_845:g.162926C>T
  • LRG_845p1:p.Gly1363=
  • LRG_845p2:p.Gly1381=
  • NC_000002.11:g.71838678C>T
  • NM_003494.3:c.4089C>T
  • p.Gly1363Gly
Links:
dbSNP: rs145412880
NCBI 1000 Genomes Browser:
rs145412880
Molecular consequence:
  • NM_001130455.2:c.4092C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001130976.2:c.4047C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001130977.2:c.4047C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001130978.2:c.4089C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001130979.2:c.4182C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001130980.2:c.4140C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001130981.2:c.4140C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001130982.2:c.4185C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001130983.2:c.4092C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001130984.2:c.4050C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001130985.2:c.4143C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001130986.2:c.4050C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001130987.2:c.4143C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_003494.4:c.4089C>T - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
9

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000341723Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Uncertain significance
(Jan 13, 2017)
germlineclinical testing

Citation Link,

SCV000613207Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics Criteria)
Uncertain significance
(Jul 12, 2018)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

SCV001769458GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely benign
(Apr 6, 2021)
germlineclinical testing

Citation Link,

SCV004033739CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Likely benign
(Jul 1, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes2not providednot providednot providednot providedclinical testing
not providedgermlineunknown7not providednot providednot providednot providedclinical testing

Citations

PubMed

Analysis of the DYSF mutational spectrum in a large cohort of patients.

Krahn M, BĂ©roud C, Labelle V, Nguyen K, Bernard R, Bassez G, Figarella-Branger D, Fernandez C, Bouvenot J, Richard I, Ollagnon-Roman E, Bevilacqua JA, Salvo E, Attarian S, Chapon F, Pellissier JF, Pouget J, Hammouda el H, LaforĂȘt P, Urtizberea JA, Eymard B, Leturcq F, et al.

Hum Mutat. 2009 Feb;30(2):E345-75. doi: 10.1002/humu.20910.

PubMed [citation]
PMID:
18853459

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From Eurofins Ntd Llc (ga), SCV000341723.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided7not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided7not providednot providednot provided

From Athena Diagnostics, SCV000613207.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From GeneDx, SCV001769458.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is associated with the following publications: (PMID: 26467025, 18853459)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV004033739.11

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testingnot provided

Description

DYSF: BP4, BP7

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided2not providednot providednot provided

Last Updated: Oct 20, 2024