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NM_020366.4(RPGRIP1):c.2440C>T (p.Arg814Ter) AND Leber congenital amaurosis

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 13, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000710047.1

Allele description [Variation Report for NM_020366.4(RPGRIP1):c.2440C>T (p.Arg814Ter)]

NM_020366.4(RPGRIP1):c.2440C>T (p.Arg814Ter)

Gene:
RPGRIP1:RPGR interacting protein 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q11.2
Genomic location:
Preferred name:
NM_020366.4(RPGRIP1):c.2440C>T (p.Arg814Ter)
HGVS:
  • NC_000014.9:g.21325903C>T
  • NG_008933.1:g.42927C>T
  • NM_001377523.1:c.689-1720C>T
  • NM_001377948.1:c.1366C>T
  • NM_001377949.1:c.796+1178C>T
  • NM_001377950.1:c.689-1720C>T
  • NM_001377951.1:c.191-1720C>T
  • NM_020366.4:c.2440C>TMANE SELECT
  • NP_001364877.1:p.Arg456Ter
  • NP_065099.3:p.Arg814Ter
  • NP_065099.3:p.Arg814Ter
  • NC_000014.8:g.21794062C>T
  • NM_020366.3:c.2440C>T
  • p.(Arg814*)
Protein change:
R456*
Links:
dbSNP: rs759940113
NCBI 1000 Genomes Browser:
rs759940113
Molecular consequence:
  • NM_001377523.1:c.689-1720C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001377949.1:c.796+1178C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001377950.1:c.689-1720C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001377951.1:c.191-1720C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001377948.1:c.1366C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_020366.4:c.2440C>T - nonsense - [Sequence Ontology: SO:0001587]
Observations:
2

Condition(s)

Name:
Leber congenital amaurosis (LCA)
Synonyms:
Congenital retinal blindness; Leber's amaurosis
Identifiers:
MONDO: MONDO:0018998; MeSH: D057130; MedGen: C0339527; OMIM: PS204000

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000840425Center of Genomic medicine, Geneva, University Hospital of Geneva
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Apr 13, 2018)
maternalclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedmaternalyes2not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Center of Genomic medicine, Geneva, University Hospital of Geneva, SCV000840425.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testing PubMed (1)

Description

This variant was identified in combination with another variant in the same gene (compound heterozygosity) in patient with Leber congenital amaurosis.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1maternalyesnot providednot providednot provided2not providednot providednot provided

Last Updated: Dec 11, 2022