NM_058216.3(RAD51C):c.28A>T (p.Met10Leu) AND Fanconi anemia complementation group O

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Dec 18, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000703119.14

Allele description [Variation Report for NM_058216.3(RAD51C):c.28A>T (p.Met10Leu)]

NM_058216.3(RAD51C):c.28A>T (p.Met10Leu)

Gene:

RAD51C:RAD51 paralog C [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

17q22

Genomic location:

Preferred name:

NM_058216.3(RAD51C):c.28A>T (p.Met10Leu)

HGVS:

NC_000017.11:g.58692671A>T
NG_023199.1:g.5070A>T
NG_047169.1:g.4409T>A
NM_002876.4:c.28A>T
NM_058216.3:c.28A>TMANE SELECT
NP_002867.1:p.Met10Leu
NP_478123.1:p.Met10Leu
LRG_314t1:c.28A>T
LRG_314:g.5070A>T
NC_000017.10:g.56770032A>T
NM_058216.1:c.28A>T
NM_058216.2:c.28A>T
NR_103872.2:n.70A>T
NR_103873.1:n.99A>T

Protein change:

M10L

Links:

dbSNP: rs1452865935

NCBI 1000 Genomes Browser:

rs1452865935

Molecular consequence:

NM_002876.4:c.28A>T - missense variant - [Sequence Ontology: SO:0001583]
NM_058216.3:c.28A>T - missense variant - [Sequence Ontology: SO:0001583]
NR_103872.2:n.70A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_103873.1:n.99A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: Fanconi anemia complementation group O
Identifiers:: MONDO: MONDO:0013248; MedGen: C3150653; Orphanet: 84; OMIM: 613390

Recent activity

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Agrobacterium fabrum 35/80
Agrobacterium fabrum 35/80

biosample
BioSample links for Nucleotide (Select 2498338252) (1)
BioSample
Agrobacterium fabrum strain 35/80, whole genome shotgun sequencing project
Agrobacterium fabrum strain 35/80, whole genome shotgun sequencing project
gi|2498338253|ref|NZ_JARXVP00000000 Z_JARXVP010000000

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000832001	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Uncertain significance (Dec 18, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000832001

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Uncertain significance
(Dec 18, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV000832001.5

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

This sequence change replaces methionine, which is neutral and non-polar, with leucine, which is neutral and non-polar, at codon 10 of the RAD51C protein (p.Met10Leu). This variant is present in population databases (no rsID available, gnomAD 0.01%). This variant has not been reported in the literature in individuals affected with RAD51C-related conditions. ClinVar contains an entry for this variant (Variation ID: 482159). An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant¬†is likely to be tolerated. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 26, 2024

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