NM_001126108.2(SLC12A3):c.2623G>A (p.Glu875Lys) AND not provided

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Sep 16, 2018
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000681736.1

Allele description [Variation Report for NM_001126108.2(SLC12A3):c.2623G>A (p.Glu875Lys)]

NM_001126108.2(SLC12A3):c.2623G>A (p.Glu875Lys)

Gene:

SLC12A3:solute carrier family 12 member 3 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

16q13

Genomic location:

Preferred name:

NM_001126108.2(SLC12A3):c.2623G>A (p.Glu875Lys)

HGVS:

NC_000016.10:g.56894632G>A
NG_009386.1:g.34426G>A
NM_000339.3:c.2650G>A
NM_001126107.2:c.2647G>A
NM_001126108.2:c.2623G>AMANE SELECT
NP_000330.3:p.Glu884Lys
NP_001119579.2:p.Glu883Lys
NP_001119580.2:p.Glu875Lys
NC_000016.9:g.56928544G>A

Protein change:

E875K

Links:

dbSNP: rs1441228030

NCBI 1000 Genomes Browser:

rs1441228030

Molecular consequence:

NM_000339.3:c.2650G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001126107.2:c.2647G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001126108.2:c.2623G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: CN517202

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000809191	Gharavi Laboratory, Columbia University	no assertion criteria provided (ACMG Guidelines, 2015)	Likely pathogenic (Sep 16, 2018)	germline	research	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000809191

Gharavi Laboratory, Columbia University

no assertion criteria provided

(ACMG Guidelines, 2015)

Likely pathogenic
(Sep 16, 2018)

germline

research

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	research

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Gharavi Laboratory, Columbia University, SCV000809191.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	research	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Apr 23, 2022

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