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NM_000497.4(CYP11B1):c.346T>G (p.Trp116Gly) AND Deficiency of steroid 11-beta-monooxygenase

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Aug 7, 2017
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000668604.5

Allele description [Variation Report for NM_000497.4(CYP11B1):c.346T>G (p.Trp116Gly)]

NM_000497.4(CYP11B1):c.346T>G (p.Trp116Gly)

Gene:
CYP11B1:cytochrome P450 family 11 subfamily B member 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q24.3
Genomic location:
Preferred name:
NM_000497.4(CYP11B1):c.346T>G (p.Trp116Gly)
HGVS:
  • NC_000008.11:g.142879081A>C
  • NG_007954.1:g.5740T>G
  • NG_046132.1:g.4948A>C
  • NM_000497.4:c.346T>GMANE SELECT
  • NM_001026213.1:c.346T>G
  • NP_000488.3:p.Trp116Gly
  • NP_000488.3:p.Trp116Gly
  • NP_001021384.1:p.Trp116Gly
  • NC_000008.10:g.143960497A>C
  • NM_000497.3:c.346T>G
Protein change:
W116G
Links:
dbSNP: rs772733691
NCBI 1000 Genomes Browser:
rs772733691
Molecular consequence:
  • NM_000497.4:c.346T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001026213.1:c.346T>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Deficiency of steroid 11-beta-monooxygenase (CYP11B1)
Synonyms:
ADRENAL HYPERPLASIA, CONGENITAL, DUE TO STEROID 11-BETA-HYDROXYLASE DEFICIENCY; 11-beta-hydroxylase deficiency; Congenital adrenal hyperplasia due to 11-beta-hydroxylase deficiency; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0008729; MedGen: C0268292; OMIM: 202010

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000793234Counsyl
criteria provided, single submitter

(Counsyl Autosomal Recessive and X-Linked Classification Criteria (2018))
Uncertain significance
(Aug 7, 2017)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link,

SCV000916226Illumina Laboratory Services, Illumina
criteria provided, single submitter

(ICSL Variant Classification Criteria 09 May 2019)
Uncertain significance
(Apr 28, 2017)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Functional consequences of seven novel mutations in the CYP11B1 gene: four mutations associated with nonclassic and three mutations causing classic 11{beta}-hydroxylase deficiency.

Parajes S, Loidi L, Reisch N, Dhir V, Rose IT, Hampel R, Quinkler M, Conway GS, Castro-Feijóo L, Araujo-Vilar D, Pombo M, Dominguez F, Williams EL, Cole TR, Kirk JM, Kaminsky E, Rumsby G, Arlt W, Krone N.

J Clin Endocrinol Metab. 2010 Feb;95(2):779-88. doi: 10.1210/jc.2009-0651. Epub 2010 Jan 20.

PubMed [citation]
PMID:
20089618
PMCID:
PMC2846960

Details of each submission

From Counsyl, SCV000793234.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From Illumina Laboratory Services, Illumina, SCV000916226.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

The CYP11B1 c.346T>G (p.Trp116Gly) variant is a missense variant that has been reported in a compound heterozygous state with a second missense variant in one individual with classic CYP11B1 deficiency (Parajes et al. 2010). Control data are not available for the p.Trp116Gly variant, which is reported at a frequency of 0.00002 in the European (non-Finnish) population of the Exome Aggregation Consortium. However, this frequency is based on one allele only in an area of good sequence coverage, so the variant is presumed to be rare. The Trp116 residue is noted to be conserved in the CYP11 family of proteins and is located in a region of the protein known to control access to the active site of the enzyme. The p.Trp116Gly variant is thought to affect substrate recognition. Expression of the p.Trp116Gly variant in COS-7 cells demonstrated an absence of enzymatic activity (Parajes et al. 2010). Two additional known pathogenic variants affect residue Trp116, p.Trp116Ter and p.Trp116Cys. Based on the evidence, the p.Trp116Gly variant is classified as a variant of unknown significance but suspicious for pathogenicity for congenital adrenal hyperplasia. This variant was observed by ICSL as part of a predisposition screen in an ostensibly healthy population.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024