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NM_000546.6(TP53):c.672+15T>C AND Li-Fraumeni syndrome 1

Germline classification:
Likely benign (2 submissions)
Last evaluated:
Jun 18, 2022
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000663274.4

Allele description [Variation Report for NM_000546.6(TP53):c.672+15T>C]

NM_000546.6(TP53):c.672+15T>C

Gene:
TP53:tumor protein p53 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17p13.1
Genomic location:
Preferred name:
NM_000546.6(TP53):c.672+15T>C
HGVS:
  • NC_000017.11:g.7674844A>G
  • NG_017013.2:g.17707T>C
  • NM_000546.6:c.672+15T>CMANE SELECT
  • NM_001126112.3:c.672+15T>C
  • NM_001126113.3:c.672+15T>C
  • NM_001126114.3:c.672+15T>C
  • NM_001126115.2:c.276+15T>C
  • NM_001126116.2:c.276+15T>C
  • NM_001126117.2:c.276+15T>C
  • NM_001126118.2:c.555+15T>C
  • NM_001276695.3:c.555+15T>C
  • NM_001276696.3:c.555+15T>C
  • NM_001276697.3:c.195+15T>C
  • NM_001276698.3:c.195+15T>C
  • NM_001276699.3:c.195+15T>C
  • NM_001276760.3:c.555+15T>C
  • NM_001276761.3:c.555+15T>C
  • LRG_321t1:c.672+15T>C
  • LRG_321:g.17707T>C
  • NC_000017.10:g.7578162A>G
  • NM_000546.4:c.672+15T>C
  • NM_000546.5:c.672+15T>C
Links:
dbSNP: rs140756213
NCBI 1000 Genomes Browser:
rs140756213
Molecular consequence:
  • NM_000546.6:c.672+15T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001126112.3:c.672+15T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001126113.3:c.672+15T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001126114.3:c.672+15T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001126115.2:c.276+15T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001126116.2:c.276+15T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001126117.2:c.276+15T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001126118.2:c.555+15T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001276695.3:c.555+15T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001276696.3:c.555+15T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001276697.3:c.195+15T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001276698.3:c.195+15T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001276699.3:c.195+15T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001276760.3:c.555+15T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001276761.3:c.555+15T>C - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Li-Fraumeni syndrome 1 (LFS)
Identifiers:
Gene: 553989; MedGen: C1835398; Orphanet: 524; OMIM: 151623

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000786507Counsyl
criteria provided, single submitter

(Counsyl Autosomal Dominant Disease Classification criteria (2015))		Likely benign
(May 16, 2018) 		unknownclinical testing

Counsyl_Autosomal_Dominant_Disease_Classification_criteria_(2015)_v1.pdf,

Citation Link,

SCV002582849Genome-Nilou Lab
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely benign
(Jun 18, 2022) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenonot providednot providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Counsyl, SCV000786507.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From Genome-Nilou Lab, SCV002582849.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenonot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024