NM_000406.3(GNRHR):c.317A>G (p.Gln106Arg) AND Gonadotropin deficiency

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Mar 5, 2018
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000662016.6

Allele description [Variation Report for NM_000406.3(GNRHR):c.317A>G (p.Gln106Arg)]

NM_000406.3(GNRHR):c.317A>G (p.Gln106Arg)

Gene:

GNRHR:gonadotropin releasing hormone receptor [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

4q13.2

Genomic location:

Preferred name:

NM_000406.3(GNRHR):c.317A>G (p.Gln106Arg)

HGVS:

NC_000004.12:g.67754019T>C
NG_009293.1:g.7068A>G
NM_000406.3:c.317A>GMANE SELECT
NM_001012763.2:c.317A>G
NP_000397.1:p.Gln106Arg
NP_000397.1:p.Gln106Arg
NP_001012781.1:p.Gln106Arg
NP_001012781.1:p.Gln106Arg
NC_000004.11:g.68619737T>C
NM_000406.2:c.317A>G
NM_001012763.1:c.317A>G
P30968:p.Gln106Arg

Protein change:

Q106R; GLN106ARG

Links:

UniProtKB: P30968#VAR_019313; OMIM: 138850.0001; dbSNP: rs104893836

NCBI 1000 Genomes Browser:

rs104893836

Molecular consequence:

NM_000406.3:c.317A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001012763.2:c.317A>G - missense variant - [Sequence Ontology: SO:0001583]

Observations:

Condition(s)

Name:: Gonadotropin deficiency
Identifiers:: MedGen: C4552011; Human Phenotype Ontology: HP:0008213

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000784348	Genomic Research Center, Shahid Beheshti University of Medical Sciences	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic (Mar 5, 2018)	inherited	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000784348

Genomic Research Center, Shahid Beheshti University of Medical Sciences

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic
(Mar 5, 2018)

inherited

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	inherited	no	1	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Genomic Research Center, Shahid Beheshti University of Medical Sciences, SCV000784348.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	inherited	no	not provided	not provided	not provided		1	not provided	not provided	not provided

Last Updated: May 12, 2024

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