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NM_000093.5(COL5A1):c.1588G>A (p.Gly530Ser) AND Connective tissue disorder

Germline classification:
Likely benign (1 submission)
Last evaluated:
Nov 1, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000659443.10

Allele description [Variation Report for NM_000093.5(COL5A1):c.1588G>A (p.Gly530Ser)]

NM_000093.5(COL5A1):c.1588G>A (p.Gly530Ser)

Gene:
COL5A1:collagen type V alpha 1 chain [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q34.3
Genomic location:
Preferred name:
NM_000093.5(COL5A1):c.1588G>A (p.Gly530Ser)
Other names:
p.G530S:GGC>AGC
HGVS:
  • NC_000009.12:g.134750808G>A
  • NG_008030.1:g.114003G>A
  • NM_000093.5:c.1588G>AMANE SELECT
  • NM_001278074.1:c.1588G>A
  • NP_000084.3:p.Gly530Ser
  • NP_000084.3:p.Gly530Ser
  • NP_001265003.1:p.Gly530Ser
  • LRG_737t1:c.1588G>A
  • LRG_737t2:c.1588G>A
  • LRG_737:g.114003G>A
  • LRG_737p1:p.Gly530Ser
  • LRG_737p2:p.Gly530Ser
  • NC_000009.11:g.137642654G>A
  • NM_000093.3:c.1588G>A
  • NM_000093.4:c.1588G>A
  • NM_000093.5:c.1588G>A
  • P20908:p.Gly530Ser
Protein change:
G530S
Links:
UniProtKB: P20908#VAR_015412; dbSNP: rs61735045
NCBI 1000 Genomes Browser:
rs61735045
Molecular consequence:
  • NM_000093.5:c.1588G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001278074.1:c.1588G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Connective tissue disorder
Synonyms:
Connective tissue disease
Identifiers:
MONDO: MONDO:0003900; MedGen: C0009782

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000781258Center for Human Genetics, Inc, Center for Human Genetics, Inc
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely benign
(Nov 1, 2016) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Center for Human Genetics, Inc, Center for Human Genetics, Inc, SCV000781258.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024