NM_000551.4(VHL):c.439A>G (p.Ile147Val) AND not provided

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jul 23, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000657081.3

Allele description [Variation Report for NM_000551.4(VHL):c.439A>G (p.Ile147Val)]

NM_000551.4(VHL):c.439A>G (p.Ile147Val)

Genes:

LOC107303340:3p25 von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase Alu-mediated recombination region [Gene]
VHL:von Hippel-Lindau tumor suppressor [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3p25.3

Genomic location:

Preferred name:

NM_000551.4(VHL):c.439A>G (p.Ile147Val)

HGVS:

NC_000003.12:g.10146612A>G
NG_008212.3:g.9978A>G
NG_046756.1:g.4374A>G
NM_000551.4:c.439A>GMANE SELECT
NM_001354723.2:c.*18-3175A>G
NM_198156.3:c.341-3175A>G
NP_000542.1:p.Ile147Val
NP_000542.1:p.Ile147Val
LRG_322t1:c.439A>G
LRG_322:g.9978A>G
LRG_322p1:p.Ile147Val
NC_000003.11:g.10188296A>G
NM_000551.2:c.439A>G
NM_000551.3:c.439A>G

Protein change:

I147V

Links:

dbSNP: rs1057517560

NCBI 1000 Genomes Browser:

rs1057517560

Molecular consequence:

NM_001354723.2:c.*18-3175A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_198156.3:c.341-3175A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_000551.4:c.439A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000568592	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Uncertain significance (Jul 23, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000568592

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Uncertain significance
(Jul 23, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV000568592.7

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis indicates that this missense variant does not alter protein structure/function; Observed in an individual with bilateral renal carcinomas (PMID: 20952280); This variant is associated with the following publications: (PMID: 27930734, 25742471, 20952280)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

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