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NM_001048174.2(MUTYH):c.1463C>T (p.Pro488Leu) AND not provided

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
May 6, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000656914.6

Allele description [Variation Report for NM_001048174.2(MUTYH):c.1463C>T (p.Pro488Leu)]

NM_001048174.2(MUTYH):c.1463C>T (p.Pro488Leu)

Gene:
MUTYH:mutY DNA glycosylase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p34.1
Genomic location:
Preferred name:
NM_001048174.2(MUTYH):c.1463C>T (p.Pro488Leu)
HGVS:
  • NC_000001.11:g.45329409G>A
  • NG_008189.1:g.16062C>T
  • NM_001048171.2:c.1463C>T
  • NM_001048172.2:c.1466C>T
  • NM_001048173.2:c.1463C>T
  • NM_001048174.2:c.1463C>TMANE SELECT
  • NM_001128425.2:c.1547C>T
  • NM_001293190.2:c.1508C>T
  • NM_001293191.2:c.1496C>T
  • NM_001293192.2:c.1187C>T
  • NM_001293195.2:c.1463C>T
  • NM_001293196.2:c.1187C>T
  • NM_001350650.2:c.1118C>T
  • NM_001350651.2:c.1118C>T
  • NM_012222.3:c.1538C>T
  • NP_001041636.2:p.Pro488Leu
  • NP_001041637.1:p.Pro489Leu
  • NP_001041638.1:p.Pro488Leu
  • NP_001041639.1:p.Pro488Leu
  • NP_001121897.1:p.Pro516Leu
  • NP_001121897.1:p.Pro516Leu
  • NP_001280119.1:p.Pro503Leu
  • NP_001280120.1:p.Pro499Leu
  • NP_001280121.1:p.Pro396Leu
  • NP_001280124.1:p.Pro488Leu
  • NP_001280125.1:p.Pro396Leu
  • NP_001337579.1:p.Pro373Leu
  • NP_001337580.1:p.Pro373Leu
  • NP_036354.1:p.Pro513Leu
  • LRG_220t1:c.1547C>T
  • LRG_220:g.16062C>T
  • LRG_220p1:p.Pro516Leu
  • NC_000001.10:g.45795081G>A
  • NM_001128425.1:c.1547C>T
  • NR_146882.2:n.1871C>T
  • NR_146883.2:n.1720C>T
  • p.P516L
Protein change:
P373L
Links:
dbSNP: rs587778542
NCBI 1000 Genomes Browser:
rs587778542
Molecular consequence:
  • NM_001048171.2:c.1463C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001048172.2:c.1466C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001048173.2:c.1463C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001048174.2:c.1463C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001128425.2:c.1547C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293190.2:c.1508C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293191.2:c.1496C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293192.2:c.1187C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293195.2:c.1463C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293196.2:c.1187C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001350650.2:c.1118C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001350651.2:c.1118C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_012222.3:c.1538C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_146882.2:n.1871C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_146883.2:n.1720C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000226446Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Uncertain significance
(Apr 9, 2015)
germlineclinical testing

Citation Link,

SCV000292632GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Uncertain significance
(May 6, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Details of each submission

From Eurofins Ntd Llc (ga), SCV000226446.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

From GeneDx, SCV000292632.12

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis indicates that this missense variant does not alter protein structure/function; Also known as c.1505 C>T p.(P502L); This variant is associated with the following publications: (PMID: 14991577, 20618354, 19725997, 14579148, 25820570, 28087410, 26377631, 24728327, 33471991, 11092888, 23108399, 36243179)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024