NM_000251.3(MSH2):c.818T>C (p.Val273Ala) AND not provided

Germline classification:: Likely benign (1 submission)
Last evaluated:: May 17, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000656874.3

Allele description [Variation Report for NM_000251.3(MSH2):c.818T>C (p.Val273Ala)]

NM_000251.3(MSH2):c.818T>C (p.Val273Ala)

Gene:

MSH2:mutS homolog 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2p21

Genomic location:

Preferred name:

NM_000251.3(MSH2):c.818T>C (p.Val273Ala)

HGVS:

NC_000002.12:g.47414294T>C
NG_007110.2:g.16171T>C
NM_000251.3:c.818T>CMANE SELECT
NM_001258281.1:c.620T>C
NP_000242.1:p.Val273Ala
NP_000242.1:p.Val273Ala
NP_001245210.1:p.Val207Ala
LRG_218t1:c.818T>C
LRG_218:g.16171T>C
LRG_218p1:p.Val273Ala
NC_000002.11:g.47641433T>C
NM_000251.1:c.818T>C
NM_000251.2:c.818T>C

Protein change:

V207A

Links:

dbSNP: rs144288433

NCBI 1000 Genomes Browser:

rs144288433

Molecular consequence:

NM_000251.3:c.818T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001258281.1:c.620T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

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Mus musculus cell division cycle 73, Paf1/RNA polymerase II complex component (C...
Mus musculus cell division cycle 73, Paf1/RNA polymerase II complex component (Cdc73), mRNA
gi|924182123|ref|NM_145991.2|

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000565184	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Likely benign (May 17, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000565184

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Likely benign
(May 17, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV000565184.5

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

In silico analysis, which includes protein predictors and evolutionary conservation, supports that this variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge; Observed in 0.0025% (7/280842 alleles) in large population cohorts (Lek et al., 2016); This variant is associated with the following publications: (PMID: 28481359)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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