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NM_000166.6(GJB1):c.175G>C (p.Gly59Arg) AND Charcot-Marie-Tooth Neuropathy X

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 12, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000654839.8

Allele description [Variation Report for NM_000166.6(GJB1):c.175G>C (p.Gly59Arg)]

NM_000166.6(GJB1):c.175G>C (p.Gly59Arg)

Gene:
GJB1:gap junction protein beta 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq13.1
Genomic location:
Preferred name:
NM_000166.6(GJB1):c.175G>C (p.Gly59Arg)
HGVS:
  • NC_000023.11:g.71223882G>C
  • NG_008357.1:g.13671G>C
  • NM_000166.6:c.175G>CMANE SELECT
  • NM_001097642.3:c.175G>C
  • NP_000157.1:p.Gly59Arg
  • NP_001091111.1:p.Gly59Arg
  • LRG_245t2:c.175G>C
  • LRG_245:g.13671G>C
  • LRG_245p2:p.Gly59Arg
  • NC_000023.10:g.70443732G>C
  • NM_000166.5:c.175G>C
Protein change:
G59R
Links:
dbSNP: rs1555937077
NCBI 1000 Genomes Browser:
rs1555937077
Molecular consequence:
  • NM_000166.6:c.175G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001097642.3:c.175G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Charcot-Marie-Tooth Neuropathy X
Identifiers:
MedGen: CN118851

Recent activity

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000776741Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Sep 12, 2023)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV000776741.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

This variant disrupts the p.Gly59 amino acid residue in GJB1. Other variant(s) that disrupt this residue have been observed in individuals with GJB1-related conditions (PMID: 10093067), which suggests that this may be a clinically significant amino acid residue. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt GJB1 protein function. ClinVar contains an entry for this variant (Variation ID: 447427). This missense change has been observed in individual(s) with Charcot-Marie Tooth disease, type X (PMID: 10894999). This variant is not present in population databases (gnomAD no frequency). This sequence change replaces glycine, which is neutral and non-polar, with arginine, which is basic and polar, at codon 59 of the GJB1 protein (p.Gly59Arg).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024