NM_000891.3(KCNJ2):c.919A>G (p.Met307Val) AND multiple conditions

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 30, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000644782.7

Allele description [Variation Report for NM_000891.3(KCNJ2):c.919A>G (p.Met307Val)]

NM_000891.3(KCNJ2):c.919A>G (p.Met307Val)

Gene:
KCNJ2:potassium inwardly rectifying channel subfamily J member 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17q24.3
Genomic location:
Preferred name:
NM_000891.3(KCNJ2):c.919A>G (p.Met307Val)
HGVS:
  • NC_000017.11:g.70175958A>G
  • NG_008798.1:g.11424A>G
  • NM_000891.3:c.919A>GMANE SELECT
  • NP_000882.1:p.Met307Val
  • NP_000882.1:p.Met307Val
  • LRG_328t1:c.919A>G
  • LRG_328:g.11424A>G
  • LRG_328p1:p.Met307Val
  • NC_000017.10:g.68172099A>G
  • NM_000891.2:c.919A>G
Protein change:
M307V
Links:
dbSNP: rs1555603994
NCBI 1000 Genomes Browser:
rs1555603994
Molecular consequence:
  • NM_000891.3:c.919A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Andersen Tawil syndrome (LQT7)
Synonyms:
Andersen Syndrome; Andersen cardiodysrhythmic periodic paralysis; Long QT syndrome 7; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0008222; MedGen: C1563715; Orphanet: 37553; OMIM: 170390
Name:
Short QT syndrome type 3
Identifiers:
MONDO: MONDO:0012314; MedGen: C1865018; Orphanet: 51083; OMIM: 609622

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000766496Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Pathogenic
(Aug 30, 2023)
germlineclinical testing

PubMed (7)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Mutations of KCNJ2 gene associated with Andersen-Tawil syndrome in Korean families.

Choi BO, Kim J, Suh BC, Yu JS, Sunwoo IN, Kim SJ, Kim GH, Chung KW.

J Hum Genet. 2007;52(3):280-283. doi: 10.1007/s10038-006-0100-7. Epub 2007 Jan 9.

PubMed [citation]
PMID:
17211524

Case report: A Chinese child with Andersen-Tawil syndrome due to a de novo KCNJ2 mutation.

Liu XL, Huang XJ, Luan XH, Zhou HY, Wang T, Wang JY, Shen JY, Chen SD, Tang HD, Cao L.

J Neurol Sci. 2015 May 15;352(1-2):105-6. doi: 10.1016/j.jns.2015.02.027. Epub 2015 Feb 20. No abstract available.

PubMed [citation]
PMID:
25847018
See all PubMed Citations (7)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV000766496.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (7)

Description

ClinVar contains an entry for this variant (Variation ID: 519476). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt KCNJ2 protein function. Experimental studies have shown that this missense change affects KCNJ2 function (PMID: 32499698). This variant disrupts the p.Met307 amino acid residue in KCNJ2. Other variant(s) that disrupt this residue have been observed in individuals with KCNJ2-related conditions (PMID: 17211524, 31567646), which suggests that this may be a clinically significant amino acid residue. For these reasons, this variant has been classified as Pathogenic. This missense change has been observed in individual(s) with clinical features of Andersen-Tawil syndrome (PMID: 25847018, 31068157, 31483760, 31567646, 32499698; Invitae). In at least one individual the variant was observed to be de novo. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces methionine, which is neutral and non-polar, with valine, which is neutral and non-polar, at codon 307 of the KCNJ2 protein (p.Met307Val).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024