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NM_001641.4(APEX1):c.259G>C (p.Glu87Gln) AND Head and neck cancer

Germline classification:
not provided (1 submission)
Last evaluated:
Oct 12, 2017
Review status:
no classification provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000626483.1

Allele description [Variation Report for NM_001641.4(APEX1):c.259G>C (p.Glu87Gln)]

NM_001641.4(APEX1):c.259G>C (p.Glu87Gln)

Gene:
APEX1:apurinic/apyrimidinic endodeoxyribonuclease 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q11.2
Genomic location:
Preferred name:
NM_001641.4(APEX1):c.259G>C (p.Glu87Gln)
HGVS:
  • NC_000014.9:g.20456680G>C
  • NG_008718.1:g.6550G>C
  • NM_001244249.2:c.259G>C
  • NM_001641.4:c.259G>CMANE SELECT
  • NM_080648.3:c.259G>C
  • NM_080649.3:c.259G>C
  • NP_001231178.1:p.Glu87Gln
  • NP_001632.2:p.Glu87Gln
  • NP_542379.1:p.Glu87Gln
  • NP_542380.1:p.Glu87Gln
  • NC_000014.8:g.20924839G>C
Protein change:
E87Q
Links:
dbSNP: rs762384959
NCBI 1000 Genomes Browser:
rs762384959
Molecular consequence:
  • NM_001244249.2:c.259G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001641.4:c.259G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_080648.3:c.259G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_080649.3:c.259G>C - missense variant - [Sequence Ontology: SO:0001583]
Functional consequence:
variation affecting protein structure [Variation Ontology: 0060]

Condition(s)

Name:
Head and neck cancer
Identifiers:
MONDO: MONDO:0005627; MedGen: C0278996

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000606852Cancer Biology Lab, VIT University
no classification provided
not providednot-reportedresearch

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providednot-reportedyes1not providednot providednot providednot providedresearch

Details of each submission

From Cancer Biology Lab, VIT University, SCV000606852.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
11not providednot providedresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1not-reportedyesnot providednot providednot provided1not providednot providednot provided

Last Updated: May 24, 2022