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NM_000518.5(HBB):c.316-238C>T AND beta Thalassemia

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Mar 8, 2018
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000625739.1

Allele description [Variation Report for NM_000518.5(HBB):c.316-238C>T]

NM_000518.5(HBB):c.316-238C>T

Genes:
LOC110006319:beta-globin gene 3' regulatory region [Gene]
HBB:hemoglobin subunit beta [Gene - OMIM - HGNC]
LOC107133510:origin of replication at HBB [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.4
Genomic location:
Preferred name:
NM_000518.5(HBB):c.316-238C>T
Other names:
IVS-II-613 C>T
HGVS:
  • NC_000011.10:g.5225964G>A
  • NG_000007.3:g.71652C>T
  • NG_046672.1:g.3899G>A
  • NG_053049.1:g.2285G>A
  • NG_059281.1:g.6108C>T
  • NM_000518.5:c.316-238C>TMANE SELECT
  • LRG_1232t1:c.316-238C>T
  • LRG_1232:g.6108C>T
  • NC_000011.9:g.5247194G>A
  • NM_000518.4:c.316-238C>T
Links:
dbSNP: rs558554234
NCBI 1000 Genomes Browser:
rs558554234
Molecular consequence:
  • NM_000518.5:c.316-238C>T - intron variant - [Sequence Ontology: SO:0001627]
Functional consequence:
Decreased function

Condition(s)

Name:
beta Thalassemia (BTHAL)
Synonyms:
Cooley's anemia; Erythroblastic anemia; Mediterranean anemia
Identifiers:
MONDO: MONDO:0019402; MedGen: C0005283; Orphanet: 848

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000693863Hb Lab, Kinderklinik Ulm, University Hospital Ulm
no assertion criteria provided
Pathogenic
(Mar 8, 2018)
unknownliterature only

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyes21not providednot providednot providedliterature only

Citations

PMC

Details of each submission

From Hb Lab, Kinderklinik Ulm, University Hospital Ulm, SCV000693863.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedliterature onlynot provided

Description

Rare thalassemic variant that could cause severe Thalassemia (Major or intermedia) when associated with other more common beta0 thalassemic alleles.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot provided2not provided1not provided

Last Updated: Sep 29, 2024