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NM_003119.4(SPG7):c.347C>A (p.Ser116Ter) AND Inborn genetic diseases

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jul 18, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000624073.2

Allele description [Variation Report for NM_003119.4(SPG7):c.347C>A (p.Ser116Ter)]

NM_003119.4(SPG7):c.347C>A (p.Ser116Ter)

Gene:
SPG7:SPG7 matrix AAA peptidase subunit, paraplegin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16q24.3
Genomic location:
Preferred name:
NM_003119.4(SPG7):c.347C>A (p.Ser116Ter)
HGVS:
  • NC_000016.10:g.89513008C>A
  • NG_008082.1:g.9612C>A
  • NM_001363850.1:c.347C>A
  • NM_003119.4:c.347C>AMANE SELECT
  • NM_199367.3:c.347C>A
  • NP_001350779.1:p.Ser116Ter
  • NP_003110.1:p.Ser116Ter
  • NP_955399.1:p.Ser116Ter
  • NC_000016.9:g.89579416C>A
  • NM_003119.2:c.347C>A
Protein change:
S116*
Links:
dbSNP: rs149474131
NCBI 1000 Genomes Browser:
rs149474131
Molecular consequence:
  • NM_001363850.1:c.347C>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_003119.4:c.347C>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_199367.3:c.347C>A - nonsense - [Sequence Ontology: SO:0001587]
Observations:
1

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000741673Ambry Genetics
criteria provided, single submitter

(Ambry exome assertion method (8-5-2015))
Pathogenic
(Jul 18, 2016)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Caucasian/Italian/Irish/Danishgermlineyes1not providednot provided1not providedclinical testing

Details of each submission

From Ambry Genetics, SCV000741673.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Caucasian/Italian/Irish/Danish1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided

Last Updated: Jan 7, 2023