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NM_024665.7(TBL1XR1):c.991A>T (p.Ile331Phe) AND Inborn genetic diseases

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Sep 22, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000623141.2

Allele description [Variation Report for NM_024665.7(TBL1XR1):c.991A>T (p.Ile331Phe)]

NM_024665.7(TBL1XR1):c.991A>T (p.Ile331Phe)

Genes:
LOC126806878:CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:176755168-176756367 [Gene]
TBL1XR1:TBL1X/Y related 1 [Gene - OMIM - HGNC]
TBL1XR1-AS1:TBL1XR1 antisense RNA 1 [Gene - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3q26.32
Genomic location:
Preferred name:
NM_024665.7(TBL1XR1):c.991A>T (p.Ile331Phe)
HGVS:
  • NC_000003.12:g.177038369T>A
  • NG_047195.1:g.163892A>T
  • NM_001321193.3:c.991A>T
  • NM_001321194.3:c.991A>T
  • NM_001321195.3:c.730A>T
  • NM_001374327.1:c.991A>T
  • NM_001374328.1:c.991A>T
  • NM_001374329.1:c.991A>T
  • NM_001374330.1:c.730A>T
  • NM_024665.7:c.991A>TMANE SELECT
  • NP_001308122.1:p.Ile331Phe
  • NP_001308123.1:p.Ile331Phe
  • NP_001308124.1:p.Ile244Phe
  • NP_001361256.1:p.Ile331Phe
  • NP_001361257.1:p.Ile331Phe
  • NP_001361258.1:p.Ile331Phe
  • NP_001361259.1:p.Ile244Phe
  • NP_078941.2:p.Ile331Phe
  • NC_000003.11:g.176756157T>A
  • NM_024665.4:c.991A>T
Protein change:
I244F
Links:
dbSNP: rs1553810244
NCBI 1000 Genomes Browser:
rs1553810244
Molecular consequence:
  • NM_001321193.3:c.991A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001321194.3:c.991A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001321195.3:c.730A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374327.1:c.991A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374328.1:c.991A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374329.1:c.991A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374330.1:c.730A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024665.7:c.991A>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000741794Ambry Genetics
criteria provided, single submitter

(Ambry exome assertion method (8-5-2015))
Likely pathogenic
(Sep 22, 2016)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Caucasian / Ashkenazi Jewishgermlineyes1not providednot provided1not providedclinical testing

Citations

PubMed

The WD repeat: a common architecture for diverse functions.

Smith TF, Gaitatzes C, Saxena K, Neer EJ.

Trends Biochem Sci. 1999 May;24(5):181-5. Review.

PubMed [citation]
PMID:
10322433

Details of each submission

From Ambry Genetics, SCV000741794.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Caucasian / Ashkenazi Jewish1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided

Last Updated: Mar 26, 2023