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NM_001128126.3(AP4S1):c.17T>C (p.Leu6Pro) AND Inborn genetic diseases

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jul 24, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000622777.2

Allele description [Variation Report for NM_001128126.3(AP4S1):c.17T>C (p.Leu6Pro)]

NM_001128126.3(AP4S1):c.17T>C (p.Leu6Pro)

Gene:
AP4S1:adaptor related protein complex 4 subunit sigma 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q12
Genomic location:
Preferred name:
NM_001128126.3(AP4S1):c.17T>C (p.Leu6Pro)
HGVS:
  • NC_000014.9:g.31066213T>C
  • NG_031913.1:g.46108T>C
  • NM_001128126.3:c.17T>CMANE SELECT
  • NM_001254726.2:c.17T>C
  • NM_001254727.2:c.17T>C
  • NM_001254728.2:c.17T>C
  • NM_001254729.2:c.17T>C
  • NM_007077.5:c.17T>C
  • NP_001121598.1:p.Leu6Pro
  • NP_001241655.1:p.Leu6Pro
  • NP_001241656.1:p.Leu6Pro
  • NP_001241657.1:p.Leu6Pro
  • NP_001241658.1:p.Leu6Pro
  • NP_009008.2:p.Leu6Pro
  • NC_000014.8:g.31535419T>C
  • NM_007077.3:c.17T>C
  • NM_007077.4:c.17T>C
Protein change:
L6P
Links:
dbSNP: rs1335804396
NCBI 1000 Genomes Browser:
rs1335804396
Molecular consequence:
  • NM_001128126.3:c.17T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001254726.2:c.17T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001254727.2:c.17T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001254728.2:c.17T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001254729.2:c.17T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_007077.5:c.17T>C - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000742702Ambry Genetics
criteria provided, single submitter

(Ambry exome assertion method (8-5-2015))
Likely pathogenic
(Jul 24, 2017)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Caucasian/German/Irish/Italiangermlineyes1not providednot provided1not providedclinical testing

Details of each submission

From Ambry Genetics, SCV000742702.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Caucasian/German/Irish/Italian1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided

Last Updated: Jan 7, 2023