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NM_000219.6(KCNE1):c.315G>A (p.Ser105=) AND not specified

Germline classification:
Likely benign (1 submission)
Last evaluated:
Jun 21, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000609070.4

Allele description [Variation Report for NM_000219.6(KCNE1):c.315G>A (p.Ser105=)]

NM_000219.6(KCNE1):c.315G>A (p.Ser105=)

Gene:
KCNE1:potassium voltage-gated channel subfamily E regulatory subunit 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
21q22.12
Genomic location:
Preferred name:
NM_000219.6(KCNE1):c.315G>A (p.Ser105=)
HGVS:
  • NC_000021.9:g.34449320C>T
  • NG_009091.1:g.66996G>A
  • NM_000219.6:c.315G>AMANE SELECT
  • NM_001127668.4:c.315G>A
  • NM_001127669.4:c.315G>A
  • NM_001127670.4:c.315G>A
  • NM_001270402.3:c.315G>A
  • NM_001270403.2:c.315G>A
  • NM_001270404.3:c.315G>A
  • NM_001270405.3:c.315G>A
  • NP_000210.2:p.Ser105=
  • NP_001121140.1:p.Ser105=
  • NP_001121141.1:p.Ser105=
  • NP_001121142.1:p.Ser105=
  • NP_001257331.1:p.Ser105=
  • NP_001257332.1:p.Ser105=
  • NP_001257333.1:p.Ser105=
  • NP_001257334.1:p.Ser105=
  • LRG_290t1:c.315G>A
  • LRG_290:g.66996G>A
  • NC_000021.8:g.35821618C>T
  • NM_000219.3:c.315G>A
  • NM_000219.5:c.315G>A
  • p.Ser105Ser
Links:
dbSNP: rs563859144
NCBI 1000 Genomes Browser:
rs563859144
Molecular consequence:
  • NM_000219.6:c.315G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001127668.4:c.315G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001127669.4:c.315G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001127670.4:c.315G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001270402.3:c.315G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001270403.2:c.315G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001270404.3:c.315G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001270405.3:c.315G>A - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000712286Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Likely benign
(Jun 21, 2016)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided11not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000712286.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

p.Ser105Ser in Exon 3 of KCNE1: This variant is not expected to have clinical si gnificance because it does not alter an amino acid residue and is not located wi thin the splice consensus sequence. It has been identified in 2/66144 chromosome s by the Exome Aggregation Consortium (ExAC, http://exac.broadinstitute.org; dbS NP rs563859144).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided1not provided1not provided

Last Updated: Sep 29, 2024