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NM_006941.4(SOX10):c.1125C>T (p.Thr375=) AND not specified

Germline classification:
Likely benign (1 submission)
Last evaluated:
Jul 7, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000608692.12

Allele description [Variation Report for NM_006941.4(SOX10):c.1125C>T (p.Thr375=)]

NM_006941.4(SOX10):c.1125C>T (p.Thr375=)

Genes:
POLR2F:RNA polymerase II, I and III subunit F [Gene - OMIM - HGNC]
SOX10:SRY-box transcription factor 10 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
22q13.1
Genomic location:
Preferred name:
NM_006941.4(SOX10):c.1125C>T (p.Thr375=)
HGVS:
  • NC_000022.11:g.37973771G>A
  • NG_007948.1:g.15762C>T
  • NM_001301130.2:c.293+6601G>A
  • NM_001301131.2:c.293+6601G>A
  • NM_001363825.1:c.*38+1461G>A
  • NM_006941.4:c.1125C>TMANE SELECT
  • NP_008872.1:p.Thr375=
  • NP_008872.1:p.Thr375=
  • LRG_271t1:c.1125C>T
  • LRG_271:g.15762C>T
  • LRG_271p1:p.Thr375=
  • NC_000022.10:g.38369778G>A
  • NM_006941.3:c.1125C>T
  • p.Thr375Thr
Links:
dbSNP: rs147817756
NCBI 1000 Genomes Browser:
rs147817756
Molecular consequence:
  • NM_001301130.2:c.293+6601G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001301131.2:c.293+6601G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001363825.1:c.*38+1461G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_006941.4:c.1125C>T - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000711600Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Likely benign
(Jul 7, 2016)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided11not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000711600.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

p.Thr375Thr in exon 4 of SOX10: This variant is not expected to have clinical si gnificance because it does not alter an amino acid residue and is not located wi thin the splice consensus sequence. It has been identified in 59/65842 European chromosomes by the Exome Aggregation Consortium (ExAC, http://exac.broadinstitut e.org; dbSNP rs147817756).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided1not provided1not provided

Last Updated: Nov 3, 2024