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NM_017777.4(MKS1):c.1322C>T (p.Thr441Met) AND not provided

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Jan 5, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000592032.6

Allele description [Variation Report for NM_017777.4(MKS1):c.1322C>T (p.Thr441Met)]

NM_017777.4(MKS1):c.1322C>T (p.Thr441Met)

Gene:
MKS1:MKS transition zone complex subunit 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17q22
Genomic location:
Preferred name:
NM_017777.4(MKS1):c.1322C>T (p.Thr441Met)
HGVS:
  • NC_000017.11:g.58207170G>A
  • NG_013020.1:g.19443G>A
  • NG_013032.1:g.17436C>T
  • NM_001321268.2:c.713C>T
  • NM_001321269.2:c.1322C>T
  • NM_001330397.2:c.1273+724C>T
  • NM_017777.4:c.1322C>TMANE SELECT
  • NP_001308197.1:p.Thr238Met
  • NP_001308198.1:p.Thr441Met
  • NP_060247.2:p.Thr441Met
  • NP_060247.2:p.Thr441Met
  • LRG_687t1:c.1322C>T
  • LRG_687:g.17436C>T
  • LRG_687p1:p.Thr441Met
  • NC_000017.10:g.56284531G>A
  • NM_017777.3:c.1322C>T
Protein change:
T238M
Links:
dbSNP: rs367625961
NCBI 1000 Genomes Browser:
rs367625961
Molecular consequence:
  • NM_001330397.2:c.1273+724C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001321268.2:c.713C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001321269.2:c.1322C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_017777.4:c.1322C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
3

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000709478Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL ClinVar v180209 classification definitions)
Uncertain significance
(Apr 19, 2018)
germlineclinical testing

Citation Link,

SCV002818881GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Uncertain significance
(Jan 5, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknown3not providednot providednot providednot providedclinical testing

Details of each submission

From Eurofins Ntd Llc (ga), SCV000709478.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided3not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided3not providednot providednot provided

From GeneDx, SCV002818881.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

In silico analysis supports that this missense variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024