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NM_000138.5(FBN1):c.5898_5912del (p.Asp1967_Cys1971del) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jun 12, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000590437.1

Allele description [Variation Report for NM_000138.5(FBN1):c.5898_5912del (p.Asp1967_Cys1971del)]

NM_000138.5(FBN1):c.5898_5912del (p.Asp1967_Cys1971del)

Gene:
FBN1:fibrillin 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
15q21.1
Genomic location:
Preferred name:
NM_000138.5(FBN1):c.5898_5912del (p.Asp1967_Cys1971del)
HGVS:
  • NC_000015.10:g.48445381_48445395del
  • NG_008805.2:g.205394_205408del
  • NM_000138.5:c.5898_5912delMANE SELECT
  • NP_000129.3:p.Asp1967_Cys1971del
  • LRG_778:g.205394_205408del
  • NC_000015.9:g.48737578_48737592del
  • NM_000138.4:c.5898_5912delAGATGGGAGGACCTG
Links:
dbSNP: rs1555395744
NCBI 1000 Genomes Browser:
rs1555395744
Molecular consequence:
  • NM_000138.5:c.5898_5912del - inframe_deletion - [Sequence Ontology: SO:0001822]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000695571Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Uncertain significance
(Jun 12, 2017)
germlineclinical testing

LabCorp Variant Classification Summary - May 2015.docx

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV000695571.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Variant summary: The FBN1 c.5898_5912delAGATGGGAGGACCTG (p.Asp1967_Cys1971del) variant located in an EGF-like domain causes an in-frame deletion, involving a Cysteine. "The sulfhydryl group of cysteine is unique in its ability to participate in disulfide covalent cross-linkage. In fact, two thirds of fibrillin cysteine residues exist in the half-cystinyl form, suggesting their participation in intramolecular disulfide linkage. The cysteine residues in the EGF-like motif may also be necessary for intermolecular interactions with other fibrillin molecules or with other proteins (Dietz_1992)." The Cys 1971 is involved in disulfide bond with Cys1958, therefore, deletion of cysteine in this domain disrupt disulfide binding, effecting secondary or tertiary structure or possibly impairing fibrillin interactions. This variant is absent in 121066 control chromosomes (ExAC). The variant of interest has not, to our knowledge, been reported in affected individuals via publications and/or reputable databases/clinical diagnostic laboratories; nor evaluated for functional impact by in vivo/vitro studies. Taken together, this variant is classified as a "Variant of Uncertain Significance - Possibly Pathogenic."

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 5, 2022